Jatropha Genome Database

JcCB0504061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.20 + phase: 1 /pseudo/partial
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g00920.1                                                        58   3e-09
Glyma02g00810.2                                                        58   3e-09
Glyma02g00810.1                                                        58   3e-09
Glyma13g16440.1                                                        53   7e-08

>Glyma10g00920.1 
          Length = 328

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA++L GVK
Sbjct: 23 PMIARGVMLGPDQPVILHMLDIPPAAESLNGVK 55


>Glyma02g00810.2 
          Length = 307

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA++L GVK
Sbjct: 23 PMIARGVMLGPDQPVILHMLDIPPAAESLNGVK 55


>Glyma02g00810.1 
          Length = 332

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/33 (75%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA++L GVK
Sbjct: 23 PMIARGVMLGPDQPVILHMLDIPPAAESLNGVK 55


>Glyma13g16440.1 
          Length = 373

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG MLG +QP+ILHMLDIE A ++L+G+K
Sbjct: 64 PMIARGAMLGPNQPMILHMLDIEPATESLKGLK 96