Jatropha Genome Database

JcCB0504061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.10 + phase: 1 /partial
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g16440.1                                                       149   5e-37
Glyma02g00810.1                                                       145   1e-35
Glyma10g00920.1                                                       144   2e-35
Glyma10g00920.2                                                       144   3e-35
Glyma02g00810.2                                                        97   4e-21
Glyma20g33380.1                                                        57   6e-09
Glyma10g34150.1                                                        56   9e-09
Glyma10g34150.3                                                        49   9e-07

>Glyma13g16440.1 
          Length = 373

 Score =  149 bits (377), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 73/81 (90%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTPKG WVSMGVYSDGSYGI  GLIYSFPVTCE+G+W+IVQGLKID+FSR 
Sbjct: 293 CDHIRDWVLGTPKGEWVSMGVYSDGSYGIPTGLIYSFPVTCERGDWNIVQGLKIDQFSRE 352

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMD TA+EL EEK+LA SCLN
Sbjct: 353 KMDKTAQELIEEKTLAKSCLN 373


>Glyma02g00810.1 
          Length = 332

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 71/81 (87%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W+IVQGL IDEFSR 
Sbjct: 252 CDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQGLSIDEFSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK+LAYSCLN
Sbjct: 312 KLDLTAEELSEEKALAYSCLN 332


>Glyma10g00920.1 
          Length = 328

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 71/81 (87%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W+IVQGL IDEFSR 
Sbjct: 248 CDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWTIVQGLPIDEFSRK 307

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK+LAYSCLN
Sbjct: 308 KLDLTAEELSEEKALAYSCLN 328


>Glyma10g00920.2 
          Length = 242

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 71/81 (87%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W+IVQGL IDEFSR 
Sbjct: 162 CDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWTIVQGLPIDEFSRK 221

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK+LAYSCLN
Sbjct: 222 KLDLTAEELSEEKALAYSCLN 242


>Glyma02g00810.2 
          Length = 307

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 44/51 (86%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQG 53
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W+IVQG
Sbjct: 252 CDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQG 302


>Glyma20g33380.1 
          Length = 465

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D IR  V  TP+G W S GVYS+G+ YGI  G+++S P   +  G++ +V+ +  D++ R
Sbjct: 366 DAIRSLVTPTPEGDWFSSGVYSNGNPYGIAEGIVFSMPCRSKGDGDYELVKDVIFDDYLR 425

Query: 62  AKMDATAKELTEEK 75
            ++  T  EL  EK
Sbjct: 426 QRIAKTEAELLAEK 439


>Glyma10g34150.1 
          Length = 436

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D IR  V  TP+G W S GVYSDG+ YGI  G+++S P   +  G++ +V+ +  D++ +
Sbjct: 337 DAIRSLVTPTPEGDWFSSGVYSDGNPYGIAEGIVFSMPCRSKGDGDYELVKDVIFDDYLQ 396

Query: 62  AKMDATAKELTEEK 75
            ++  T  EL  EK
Sbjct: 397 QRIAKTEAELLAEK 410


>Glyma10g34150.3 
          Length = 402

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D IR  V  TP+G W S GVYSDG+ YGI  G+++S P   +  G++ +V+ +  D++ +
Sbjct: 337 DAIRSLVTPTPEGDWFSSGVYSDGNPYGIAEGIVFSMPCRSKGDGDYELVKDVIFDDYLQ 396

Query: 62  AKM 64
            ++
Sbjct: 397 QRI 399