Jatropha Genome Database

JcCB0492761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.20 - phase: 0 /partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g30220.1                                                        74   3e-14
Glyma20g37170.1                                                        71   3e-13
Glyma20g37170.2                                                        70   4e-13

>Glyma10g30220.1 
          Length = 570

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 45/55 (81%), Gaps = 1/55 (1%)

Query: 1   DYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPEIGPSSPVTDELSLV 55
           DYIDSMEGATLSGRQASAYICDAGE+LVALRKKL A    ++  S+   DELSLV
Sbjct: 517 DYIDSMEGATLSGRQASAYICDAGEELVALRKKLDAEFKDDLKISN-TKDELSLV 570


>Glyma20g37170.1 
          Length = 570

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 1   DYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPEIGPSSPVTDELSLV 55
           DYIDSMEGATLSGRQASAYICDAGE LVALRKKL      ++  S+   DELSLV
Sbjct: 517 DYIDSMEGATLSGRQASAYICDAGEGLVALRKKLDDEFKDDLTISN-TKDELSLV 570


>Glyma20g37170.2 
          Length = 569

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 1   DYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPEIGPSSPVTDELSLV 55
           DYIDSMEGATLSGRQASAYICDAGE LVALRKKL      ++  S+   DELSLV
Sbjct: 516 DYIDSMEGATLSGRQASAYICDAGEGLVALRKKLDDEFKDDLTISN-TKDELSLV 569