Jatropha Genome Database

JcCB0492761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.10 + phase: 0 
         (322 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g43230.1                                                       446   e-125
Glyma03g40560.1                                                        91   2e-18
Glyma01g02430.1                                                        59   6e-09

>Glyma19g43230.1 
          Length = 300

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/302 (69%), Positives = 250/302 (82%), Gaps = 13/302 (4%)

Query: 12  RPLKVITGADAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXX 71
           RP+K+I  AD +G  LKDALV+HLR+LNI VEDLGTSSYYS  AEVGRRVS ++      
Sbjct: 7   RPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSSS---- 62

Query: 72  XXXEIRGLVACGTGVGVSIFANKFPGVFANTCLSTADAINTRSINNCNVLAVSGLATTPE 131
              +IRGLVACGTG GVSIFANK+PGV+A TCLS +DA+N RSINN NVLAVSG  T+PE
Sbjct: 63  ---DIRGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPE 119

Query: 132 SGIEILDAWLNTPFKAPCPAFGSTPYNEEISSFLDNSLVEMPKIGQEDKKEETSTLNPCA 191
           + +E+LDAWLNTPFK+ CPA    P+ +EI SFL++SLVEMP+IG+E         + CA
Sbjct: 120 AAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKE------GAFDTCA 173

Query: 192 LCCLVKNRKLDPIDIIPGGSMKIVRESPTSAFVSFKAGSVEPAHHHTFGHDLVVIKGSKR 251
           +CCLVKNR+L+PID+IPGGSMKI+RE+PTSAFV FKAGSVEPAHHHTFGHDLVVI+G K 
Sbjct: 174 VCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 233

Query: 252 VWNLSKKTKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGQWDIFFDEDLEVAKSAIE 311
           VWNL+K+ +YDL VGDYLFTP GDVHRVKY EDTEFFIKW+G WD+FFDEDL+ AK+AI+
Sbjct: 234 VWNLTKEQRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAID 293

Query: 312 KE 313
           KE
Sbjct: 294 KE 295


>Glyma03g40560.1 
          Length = 51

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/50 (74%), Positives = 43/50 (86%)

Query: 230 SVEPAHHHTFGHDLVVIKGSKRVWNLSKKTKYDLVVGDYLFTPAGDVHRV 279
           S+  +HHHTFGHDLVVI+G K VWNL+K+ +YDL VGDYLFTP GDVHRV
Sbjct: 1   SISSSHHHTFGHDLVVIEGKKSVWNLTKEQRYDLTVGDYLFTPPGDVHRV 50


>Glyma01g02430.1 
          Length = 170

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 9/75 (12%)

Query: 15 KVITGADAYGCTLKDALVSHLRSLNIDVEDLGTSSYYSIAAEVGRRVSAANXXXXXXXXX 74
          K+I     +  +LKD  V HL +LNI+VEDLG SSYYS   +VG RVS +          
Sbjct: 6  KIIIAVVDFDISLKDVFVFHLHTLNIEVEDLGISSYYSARVKVGCRVSKS---------F 56

Query: 75 EIRGLVACGTGVGVS 89
           I  L+ACGT V +S
Sbjct: 57 SIYDLIACGTIVDIS 71