Jatropha Genome Database

JcCB0488391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0488391.10 - phase: 0 /partial
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g33930.1                                                       151   2e-37
Glyma06g20510.1                                                       149   9e-37
Glyma14g01380.1                                                       141   1e-34

>Glyma04g33930.1 
          Length = 143

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 83/114 (72%), Gaps = 3/114 (2%)

Query: 1   MFMTRFIGRTLFXXXXXXXXXXXXXTIQFAR---NPLEEFFEADRSQDEDNKIFYGRSWK 57
           MF++R +GRTLF                  R   NPL+EFFEADRS D+D  + YGRSWK
Sbjct: 1   MFLSRTLGRTLFAAAARSKQYATTAAAAAGREGHNPLQEFFEADRSPDDDKPVVYGRSWK 60

Query: 58  ASELRLKSWDDLQKLWYVMLKEKNMLMTQRQMLHAQNLRFPNPERLPKVELSFS 111
           ASELRLKSWDDL KLWYV+LKEKNMLMTQRQML+AQNLRFPNPER+PKV  S  
Sbjct: 61  ASELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 114


>Glyma06g20510.1 
          Length = 142

 Score =  149 bits (375), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 1   MFMTRFIGRTLFXXXXXXXXXXXXXTIQF--ARNPLEEFFEADRSQDEDNKIFYGRSWKA 58
           MF++R +GRTLF                     NPL+EFFEADRS ++D  + YGRSWKA
Sbjct: 1   MFLSRTLGRTLFAAAARSKQYATTAAAASREGHNPLQEFFEADRSPEDDKPVVYGRSWKA 60

Query: 59  SELRLKSWDDLQKLWYVMLKEKNMLMTQRQMLHAQNLRFPNPERLPKVELSFS 111
            ELRLKSWDDL KLWYV+LKEKNMLMTQRQML+AQNLRFPNPER+PKV  S  
Sbjct: 61  CELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMC 113


>Glyma14g01380.1 
          Length = 116

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 73/85 (85%)

Query: 27  IQFARNPLEEFFEADRSQDEDNKIFYGRSWKASELRLKSWDDLQKLWYVMLKEKNMLMTQ 86
           I+   NPL+EFFEADRS D+D  + YGRSWKASELRLKSWDDL KLWYV+LK+KNMLMTQ
Sbjct: 3   IKTLCNPLQEFFEADRSHDDDKPVVYGRSWKASELRLKSWDDLHKLWYVLLKDKNMLMTQ 62

Query: 87  RQMLHAQNLRFPNPERLPKVELSFS 111
           RQML+AQNLRFPNPER+PKV  S  
Sbjct: 63  RQMLNAQNLRFPNPERIPKVRKSMC 87