Jatropha Genome Database

JcCB0487491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487491.10 + phase: 0 
         (202 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g53370.1                                                       205   2e-53
Glyma08g48120.1                                                       201   6e-52
Glyma13g07660.1                                                       199   2e-51
Glyma19g06740.1                                                       158   4e-39

>Glyma18g53370.1 
          Length = 421

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 115/148 (77%), Gaps = 2/148 (1%)

Query: 42  CSVQNYDWGIIGNNSQVARLFALNSGSDICPNKPYAEFWIGTHESGPSFLDHGNAGFRSS 101
           CSV+NYDWG+ G  S+VARL ALNS S+     PYAE W+GTH+SGPSFL   N G  + 
Sbjct: 11  CSVKNYDWGLPGRVSEVARLHALNSASEFHAEDPYAELWMGTHDSGPSFLASSN-GNENG 69

Query: 102 LSLKSWILDNPILVLGDRVFEKWGGDLPFLLKVLSVEKALSIQAHPDKELARALHISQPN 161
           +SLK+WI +NP  VLG +V  KWG DLPFL KVLSV KALSIQAHPDKELAR LH   P+
Sbjct: 70  VSLKAWISENPD-VLGHKVLHKWGSDLPFLFKVLSVGKALSIQAHPDKELARTLHKLHPD 128

Query: 162 VYKDGNHKPEMALALTEFEALCGFISTK 189
           +YKDGNHKPEMALALT FEALCGFI+ K
Sbjct: 129 LYKDGNHKPEMALALTNFEALCGFITLK 156


>Glyma08g48120.1 
          Length = 421

 Score =  201 bits (510), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 115/148 (77%), Gaps = 2/148 (1%)

Query: 42  CSVQNYDWGIIGNNSQVARLFALNSGSDICPNKPYAEFWIGTHESGPSFLDHGNAGFRSS 101
           CSV+NYDWG+ G+ S+VARL ALNS S +    P+AE W+GTH+SGPSFL   N    + 
Sbjct: 11  CSVKNYDWGLPGHVSEVARLHALNSASQLHAEDPFAELWMGTHDSGPSFLASSNRN-GNG 69

Query: 102 LSLKSWILDNPILVLGDRVFEKWGGDLPFLLKVLSVEKALSIQAHPDKELARALHISQPN 161
           +SLK+WI +NP  VLGD+V  KWG DLPFL KVLSV KALSIQAHPDKELAR LH   P+
Sbjct: 70  VSLKAWISENPD-VLGDKVLHKWGSDLPFLFKVLSVGKALSIQAHPDKELARTLHKLHPD 128

Query: 162 VYKDGNHKPEMALALTEFEALCGFISTK 189
           +YKD NHKPEMALA+T FEALCGFI+ K
Sbjct: 129 LYKDANHKPEMALAITSFEALCGFITLK 156


>Glyma13g07660.1 
          Length = 449

 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 122/154 (79%), Gaps = 7/154 (4%)

Query: 42  CSVQNYDWGIIGNNSQVARLFALNSGS----DICPNKPYAEFWIGTHESGPSFLDHGNAG 97
           CSV+NY+WG    +S VA+LF++NSGS     +  ++PYAE W+G+H SGPSF+     G
Sbjct: 25  CSVKNYEWGKPCRDSLVAKLFSMNSGSLQSSQLDEDQPYAELWMGSHVSGPSFIVFD--G 82

Query: 98  FRSSLSLKSWILDNPILVLGDRVFEKWGGDLPFLLKVLSVEKALSIQAHPDKELARALHI 157
            +  ++LKSW+L+NP  VLG +V EKWGGDLPFL KVLSV+KALSIQAHPDKELAR LH 
Sbjct: 83  SQQRVTLKSWLLENPN-VLGPKVVEKWGGDLPFLFKVLSVDKALSIQAHPDKELARTLHK 141

Query: 158 SQPNVYKDGNHKPEMALALTEFEALCGFISTKVI 191
             P+VYKDGNHKPEMALA+TEFEALCGF++ KV+
Sbjct: 142 LHPDVYKDGNHKPEMALAVTEFEALCGFVTLKVL 175


>Glyma19g06740.1 
          Length = 273

 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 98/133 (73%), Gaps = 13/133 (9%)

Query: 65  NSGS------DICPNKPYAEFWIGTHESGPSF--LDHGNAGFRSSLSLKSWILDNPILVL 116
           NSGS      D   ++PYAEFW+G+H SGPSF  LD    G    ++LKSW+L+NP  VL
Sbjct: 3   NSGSSQSELDDEEEDQPYAEFWMGSHVSGPSFIVLD----GSEQRVTLKSWLLENPN-VL 57

Query: 117 GDRVFEKWGGDLPFLLKVLSVEKALSIQAHPDKELARALHISQPNVYKDGNHKPEMALAL 176
           G +V EKWGGDLPFL KVLSV+KALSIQAHPDK LAR L    P+VYKDGNHKPEMALA 
Sbjct: 58  GPKVVEKWGGDLPFLFKVLSVDKALSIQAHPDKNLARTLLKLHPDVYKDGNHKPEMALAG 117

Query: 177 TEFEALCGFISTK 189
           TEF+ LCG ++ K
Sbjct: 118 TEFKVLCGLVTLK 130