Jatropha Genome Database

JcCB0481531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0481531.10 - phase: 0 
         (117 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g34300.1                                                       125   9e-30
Glyma13g34290.1                                                       121   2e-28

>Glyma13g34300.1 
          Length = 342

 Score =  125 bits (314), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 79/108 (73%), Gaps = 3/108 (2%)

Query: 5   LWIPILISLSKELSLAKAAHSNILLPSQIDDESSSPVPRCPAPDPKLNYRPVIGILSHPG 64
           +W+   ++   +   +  AHS ILLP Q+  +S      CPAPDP L Y+PVIGI+SHPG
Sbjct: 6   VWVLFHLAFFSQCLPSAWAHSAILLPGQLARDSPQ---SCPAPDPNLYYKPVIGIVSHPG 62

Query: 65  DGASRRLNNATNASYIAASYVKFVESAGARVIPLIYNEPPEVLFEVVQ 112
           DGAS RL+NAT ASYIAASYVKFVE+AGARV+PLIY EPPE L + ++
Sbjct: 63  DGASGRLSNATGASYIAASYVKFVEAAGARVVPLIYTEPPEKLLKKLE 110


>Glyma13g34290.1 
          Length = 343

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 3/103 (2%)

Query: 5   LWIPILISLSKELSLAKAAHSNILLPSQIDDESSSPVPRCPAPDPKLNYRPVIGILSHPG 64
           L +   ++L   L  A +   +I LPSQ+ D+ S     C A DP LNY+PVIGIL+HPG
Sbjct: 7   LSLFFFVTLFTCLLSATSHDDHIFLPSQLHDDDSVS---CTATDPSLNYKPVIGILTHPG 63

Query: 65  DGASRRLNNATNASYIAASYVKFVESAGARVIPLIYNEPPEVL 107
           DGAS RL+NAT  SYIAASYVKFVES GARVIPLIYNE PE L
Sbjct: 64  DGASGRLSNATGVSYIAASYVKFVESGGARVIPLIYNESPENL 106