Jatropha Genome Database

JcCB0480731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480731.10 - phase: 0 /partial
         (100 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g05340.1                                                       191   2e-49
Glyma05g34110.1                                                       108   1e-24
Glyma08g05580.2                                                       108   2e-24
Glyma08g05580.1                                                       108   2e-24
Glyma08g05580.3                                                       108   2e-24
Glyma08g05580.4                                                       108   2e-24
Glyma19g27540.1                                                        64   3e-11
Glyma19g27570.1                                                        61   3e-10
Glyma19g27570.2                                                        59   1e-09

>Glyma16g05340.1 
          Length = 485

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/100 (90%), Positives = 97/100 (97%)

Query: 1   KYAKHVGLKRDFRLVVRGAARNMVTILNGSTDEVLIIKSVTHRDFNAMIKSIPNPVYLFQ 60
           KYAK+VGLKRDFRLVVRGAARNMV ILNGS +EVLIIKS+THR+ NA+IK+IPNPVYLFQ
Sbjct: 229 KYAKYVGLKRDFRLVVRGAARNMVPILNGSDNEVLIIKSLTHREINAVIKTIPNPVYLFQ 288

Query: 61  GIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           GIVLRRGAKGTGMKSIELALSMCDI+DIYGFTVDPGYTEW
Sbjct: 289 GIVLRRGAKGTGMKSIELALSMCDIIDIYGFTVDPGYTEW 328


>Glyma05g34110.1 
          Length = 435

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+    EVLIIK+  H   N MI+ +P  NPVY
Sbjct: 205 YTDYVGRKSTFRLLNRGSAKALDKVVELDEQRKEVLIIKTTVHDIMNKMIREVPIKNPVY 264

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALSMCD VD+YGFTVDPGY EW
Sbjct: 265 LMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 307


>Glyma08g05580.2 
          Length = 345

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+    EVLIIK+  H   N MI+ +P  NPVY
Sbjct: 212 YTDYVGRKSTFRLLNRGSAKALDKVVELDEQRKEVLIIKTTIHDIMNKMIREVPIKNPVY 271

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALSMCD VD+YGFTVDPGY EW
Sbjct: 272 LMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 314


>Glyma08g05580.1 
          Length = 442

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+    EVLIIK+  H   N MI+ +P  NPVY
Sbjct: 212 YTDYVGRKSTFRLLNRGSAKALDKVVELDEQRKEVLIIKTTIHDIMNKMIREVPIKNPVY 271

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALSMCD VD+YGFTVDPGY EW
Sbjct: 272 LMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 314


>Glyma08g05580.3 
          Length = 417

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+    EVLIIK+  H   N MI+ +P  NPVY
Sbjct: 187 YTDYVGRKSTFRLLNRGSAKALDKVVELDEQRKEVLIIKTTIHDIMNKMIREVPIKNPVY 246

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALSMCD VD+YGFTVDPGY EW
Sbjct: 247 LMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 289


>Glyma08g05580.4 
          Length = 402

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+    EVLIIK+  H   N MI+ +P  NPVY
Sbjct: 172 YTDYVGRKSTFRLLNRGSAKALDKVVELDEQRKEVLIIKTTIHDIMNKMIREVPIKNPVY 231

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALSMCD VD+YGFTVDPGY EW
Sbjct: 232 LMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEW 274


>Glyma19g27540.1 
          Length = 185

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 73  MKSIELALSMCDIVDIYGFTVDPGYTEW 100
           MKSIELALSMCDI+DIYGFTVDPGYTEW
Sbjct: 1   MKSIELALSMCDIIDIYGFTVDPGYTEW 28


>Glyma19g27570.1 
          Length = 314

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/30 (93%), Positives = 29/30 (96%)

Query: 1   KYAKHVGLKRDFRLVVRGAARNMVTILNGS 30
           KYAK+VGLKRDFRLVVRGAARNMV ILNGS
Sbjct: 229 KYAKYVGLKRDFRLVVRGAARNMVPILNGS 258


>Glyma19g27570.2 
          Length = 254

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 29/30 (96%)

Query: 1   KYAKHVGLKRDFRLVVRGAARNMVTILNGS 30
           KYAK+VGLKRDFRLVVRGAARNMV ILNGS
Sbjct: 169 KYAKYVGLKRDFRLVVRGAARNMVPILNGS 198