Jatropha Genome Database

JcCB0480341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480341.10 - phase: 0 /partial
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g00960.1                                                       107   2e-24
Glyma06g00990.1                                                       106   7e-24

>Glyma04g00960.1 
          Length = 697

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 69/96 (71%), Gaps = 7/96 (7%)

Query: 1  MPALACCVDAALAPPGYANHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPSLS 60
          MP LACCVDAA APPGYA  AGD S  + I F+GV             N+  +HWSPSLS
Sbjct: 1  MPVLACCVDAA-APPGYA-FAGDISFPAPIAFTGVPPATADDT-----NNSNNHWSPSLS 53

Query: 61 AALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          AALY +DGWG PYF+VN++GNI+V P+G+DTL+HQE
Sbjct: 54 AALYNVDGWGGPYFAVNTAGNISVRPHGSDTLSHQE 89


>Glyma06g00990.1 
          Length = 691

 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 69/96 (71%), Gaps = 9/96 (9%)

Query: 1  MPALACCVDAALAPPGYANHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPSLS 60
          MPALACCVDAA APPGYA  AGD S  + +  +GV            D+S  + WSPSLS
Sbjct: 1  MPALACCVDAA-APPGYA-FAGDISFPAPVALTGVPPATT-------DDSNNNRWSPSLS 51

Query: 61 AALYKIDGWGAPYFSVNSSGNIAVHPYGTDTLAHQE 96
          AALY +DGWG PYF+VN++GNI+V P+G+DTL+HQE
Sbjct: 52 AALYNVDGWGGPYFAVNTAGNISVRPHGSDTLSHQE 87