Jatropha Genome Database

JcCB0473701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0473701.10 + phase: 1 /partial
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g18980.1                                                       107   2e-24
Glyma10g24590.1                                                       107   2e-24
Glyma20g18980.2                                                       107   3e-24
Glyma10g24590.2                                                       107   3e-24
Glyma20g01180.2                                                        82   1e-16
Glyma20g01180.1                                                        82   1e-16
Glyma07g29670.1                                                        80   5e-16

>Glyma20g18980.1 
          Length = 461

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMK+RGRDCRFGV+SMCIGTGMGAAAVFE GD  DELCNARK + D LLSK
Sbjct: 400 ARCVATLLHEMKKRGRDCRFGVISMCIGTGMGAAAVFESGDCADELCNARKVD-DLLLSK 458

Query: 61  DA 62
           DA
Sbjct: 459 DA 460


>Glyma10g24590.1 
          Length = 463

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMK+RGRDCRFGV+SMCIGTGMGAAAVFE GD  DELCNARK + D LLSK
Sbjct: 400 ARCVATLLHEMKKRGRDCRFGVISMCIGTGMGAAAVFESGDCADELCNARKVD-DLLLSK 458

Query: 61  DA 62
           DA
Sbjct: 459 DA 460


>Glyma20g18980.2 
          Length = 344

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMK+RGRDCRFGV+SMCIGTGMGAAAVFE GD  DELCNARK + D LLSK
Sbjct: 283 ARCVATLLHEMKKRGRDCRFGVISMCIGTGMGAAAVFESGDCADELCNARKVD-DLLLSK 341

Query: 61  DA 62
           DA
Sbjct: 342 DA 343


>Glyma10g24590.2 
          Length = 346

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 1/62 (1%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCVATLLHEMK+RGRDCRFGV+SMCIGTGMGAAAVFE GD  DELCNARK + D LLSK
Sbjct: 283 ARCVATLLHEMKKRGRDCRFGVISMCIGTGMGAAAVFESGDCADELCNARKVD-DLLLSK 341

Query: 61  DA 62
           DA
Sbjct: 342 DA 343


>Glyma20g01180.2 
          Length = 445

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 41/41 (100%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGD 41
           ARCVATLL+EMKRRG+DCR+GV+SMCIG+GMGAAAVFERGD
Sbjct: 404 ARCVATLLNEMKRRGKDCRYGVISMCIGSGMGAAAVFERGD 444


>Glyma20g01180.1 
          Length = 445

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 41/41 (100%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGD 41
           ARCVATLL+EMKRRG+DCR+GV+SMCIG+GMGAAAVFERGD
Sbjct: 404 ARCVATLLNEMKRRGKDCRYGVISMCIGSGMGAAAVFERGD 444


>Glyma07g29670.1 
          Length = 445

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 40/41 (97%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGD 41
           ARCVATLL+EMKR G+DCRFGV+SMCIG+GMGAAAVFERGD
Sbjct: 404 ARCVATLLNEMKRGGKDCRFGVISMCIGSGMGAAAVFERGD 444