Jatropha Genome Database

JcCB0471851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0471851.10 + phase: 0 /partial
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g26710.1                                                        67   8e-12
Glyma08g09710.1                                                        64   6e-11

>Glyma05g26710.1 
          Length = 241

 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 76/144 (52%), Gaps = 13/144 (9%)

Query: 17  TGYLEDALLEFSERSKRRRLLLYTGDHHQIKKSNDHLAKSYCNANYDWEMSE---NFSCM 73
           TGYLEDAL+E  ERSKRRR+L    D H  K   D L +S+ N N  W       NF CM
Sbjct: 25  TGYLEDALIESCERSKRRRVLPCATDEHS-KSFIDDLEQSFWNFNPLWNQPVENFNFYCM 83

Query: 74  SYITSSINGVSDGPISTSISDISEEANA-ITEMKTPEEELISASHETLDSSSSPYKDSAK 132
           + I     G+SD  ISTS    SEEAN  + + KTPEE + ++      SSS  YK  A 
Sbjct: 84  NQI-ERFCGISDEHISTS---RSEEANILLADTKTPEETISASESLNSSSSS--YKQPAT 137

Query: 133 TKSIFDKENQFQSDDEEKRKKRVI 156
            K+        ++DD   R K+V+
Sbjct: 138 CKTTDPTVAPTENDD--MRNKKVV 159


>Glyma08g09710.1 
          Length = 283

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 17  TGYLEDALLEFSERSKRRRLLLYTGDHHQIKKSNDHLAKSYCNANYDWEMSE---NFSCM 73
           TGYLEDAL+E  ERSKRRR+L    D H  K   D L +S+ N N  W       NF CM
Sbjct: 66  TGYLEDALIESCERSKRRRVLPCAADEHS-KSFIDDLEQSFWNFNPLWNQPVENFNFYCM 124

Query: 74  SYITSSINGVSDGPISTSISDISEEANA-ITEMKTPEEELISASHETLDSSSSPYKDSAK 132
           + I     G SD  ISTS    SEEAN  + + KTPEE + ++      SSS  YK    
Sbjct: 125 NQI-ERFCGFSDEHISTS---RSEEANILLADTKTPEETISASESLNSSSSS--YKQPVT 178

Query: 133 TKSIFDKENQFQSDDEEKRKKRVI 156
            K+        ++DD   R K+V+
Sbjct: 179 CKTTDPTVAPTENDD--TRNKKVV 200