Jatropha Genome Database

JcCB0470911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0470911.10 + phase: 0 /partial
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36970.1                                                       185   1e-47

>Glyma12g36970.1 
          Length = 279

 Score =  185 bits (469), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 114/144 (79%), Gaps = 5/144 (3%)

Query: 1   MLKIPKHQVAGHKASDGLLGPLIDDSGRFYKPLQS----DERGSKEVAFYTSFSSNAMVP 56
           MLKIP+HQVAGHKA DG+LGPL+DD G+FYKPLQ+    D RGS E++FYTS ++ A   
Sbjct: 1   MLKIPEHQVAGHKAKDGILGPLVDDFGKFYKPLQTNKDDDTRGSTELSFYTSLAAAAH-D 59

Query: 57  EHIRKFFPIFYGTQLLEASDGSGLCPHIVLQDVVSNLLHPSIMDVKIGSRTWYPQAPEDY 116
             IR FFP F+GT+LL+ASDGSG  PH+VL+D++     PS+MDVKIGSRTW+    EDY
Sbjct: 60  YSIRSFFPAFHGTRLLDASDGSGPHPHLVLEDLLCGYSKPSVMDVKIGSRTWHLGDSEDY 119

Query: 117 IHKCLKKDRETSSLSLGFRISGLQ 140
           I KCLKKDRE+SSL LGFRISG++
Sbjct: 120 ICKCLKKDRESSSLPLGFRISGVK 143