Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g18620.1                                                        71   3e-13
Glyma08g46910.1                                                        47   5e-06
Glyma08g46910.2                                                        47   6e-06
Glyma18g36890.1                                                        47   7e-06

>Glyma10g18620.1 
          Length = 785

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 37/39 (94%), Gaps = 1/39 (2%)

Query: 1   LKHSNPMDSETSQPLLDARMCLLKPATNHPGQLVQGNSG 39
           +KHSNPMD+ETSQPLLDARM LLK +TNHPGQ+VQGNSG
Sbjct: 145 MKHSNPMDTETSQPLLDARMALLK-STNHPGQMVQGNSG 182


>Glyma08g46910.1 
          Length = 774

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSGEHFCSTAANPG 50
           +KH + MDSE S  L+D  RM LLK A +H GQLV GNSG    +    PG
Sbjct: 146 MKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQIPG 196


>Glyma08g46910.2 
          Length = 769

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSGEHFCSTAANPG 50
           +KH + MDSE S  L+D  RM LLK A +H GQLV GNSG    +    PG
Sbjct: 152 MKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQIPG 202


>Glyma18g36890.1 
          Length = 772

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDSE S  L+D  RM LLK A +H GQLV GNSG
Sbjct: 150 MKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSG 189