Jatropha Genome Database

JcCB0467871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467871.10 - phase: 0 /partial
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07210.1                                                       188   2e-48
Glyma13g21110.1                                                       182   1e-46
Glyma11g01860.1                                                        69   2e-12
Glyma01g43610.1                                                        62   2e-10
Glyma18g47500.1                                                        59   2e-09
Glyma09g38820.1                                                        58   3e-09

>Glyma10g07210.1 
          Length = 524

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 117/143 (81%), Gaps = 5/143 (3%)

Query: 2   ASLSSIS-LPTFSISKPTATTSTLIPKPHFLIIKSSLENKTPKPASDTAKPSSWVSPNWL 60
           +SLS ++ L  F   +PT ++ T  PKP+   +KSS+ NK P   + T+KPSSW SP+WL
Sbjct: 3   SSLSHLTPLSLFLPRRPTVSSPT--PKPYRFSVKSSI-NKPPDTGTGTSKPSSWFSPDWL 59

Query: 61  TSLTRTLTLGQNDNSGIPIASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFV 120
           TSL+R+L  G ND+SGIP+ASAKL+DVSDLLGGALFLPLFKWM +YGPIYRLAAGPRNFV
Sbjct: 60  TSLSRSLAAG-NDDSGIPLASAKLDDVSDLLGGALFLPLFKWMQDYGPIYRLAAGPRNFV 118

Query: 121 VVSDPAIAKHLLKNYGKYGKGLV 143
           VVSDPAIAKH+L+NYGKY KGLV
Sbjct: 119 VVSDPAIAKHVLRNYGKYAKGLV 141


>Glyma13g21110.1 
          Length = 534

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 104/118 (88%), Gaps = 4/118 (3%)

Query: 26  PKPHFLIIKSSLENKTPKPASDTAKPSSWVSPNWLTSLTRTLTLGQNDNSGIPIASAKLE 85
           PKP+ L +KSS+ NK P   + T KPSSW+SP+WLTSL+R+LT G ND SGIP+ASAKL+
Sbjct: 25  PKPYRLSVKSSI-NKPPD--AGTTKPSSWLSPDWLTSLSRSLTAG-NDVSGIPVASAKLD 80

Query: 86  DVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHLLKNYGKYGKGLV 143
           DVSDLLGGALFLPLFKWM +YGPIYRLAAGPRNFVVVSDPAIAKH+L+NYGKY KGLV
Sbjct: 81  DVSDLLGGALFLPLFKWMQDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKYAKGLV 138


>Glyma11g01860.1 
          Length = 576

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 9/87 (10%)

Query: 58  NWLTSLTRTLTLGQNDNSGIPIASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPR 117
           N LT L    ++G      +PIA      VSDLLG  LF  L+ W  E+G +Y+LA GP+
Sbjct: 65  NLLTDLLSGGSIG-----SMPIAEGA---VSDLLGRPLFFSLYDWFLEHGAVYKLAFGPK 116

Query: 118 NFVVVSDPAIAKHLLK-NYGKYGKGLV 143
            FVVVSDP +A+H+L+ N   Y KG++
Sbjct: 117 AFVVVSDPIVARHILRENAFSYDKGVL 143


>Glyma01g43610.1 
          Length = 489

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 56  SPNWLTSLTRTLTLGQNDNSGIPIASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAG 115
           + N LT L    ++G      +PIA      VS L G  LF  L+ W  E+G +Y+LA G
Sbjct: 10  ASNLLTDLLSGGSIGS-----MPIAEGA---VSHLFGRPLFFSLYDWFLEHGAVYKLAFG 61

Query: 116 PRNFVVVSDPAIAKHLLK-NYGKYGKGLV 143
           P+ FVVVSDP +A+H+L+ N   Y K ++
Sbjct: 62  PKAFVVVSDPIVARHILRENAFSYDKAVL 90


>Glyma18g47500.1 
          Length = 641

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query: 70  GQNDNSGIPIASAKLEDVSDLLGGALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAK 129
           G  ++  IP A   ++ V  +   A F+PL++    YG I+RL  GP++F++VSDP+IAK
Sbjct: 137 GGGEHPKIPEAKGSIKAVRSV---AFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAK 193

Query: 130 HLLKNYGK-YGKGLV 143
           H+L+   K Y KG++
Sbjct: 194 HILRENSKAYSKGIL 208


>Glyma09g38820.1 
          Length = 633

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 94  ALFLPLFKWMNEYGPIYRLAAGPRNFVVVSDPAIAKHLLKNYGK-YGKGLV 143
           A F+PL++    YG I+RL  GP++F++VSDP+IAKH+L++  K Y KG++
Sbjct: 152 AFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKSYSKGIL 202