Jatropha Genome Database

JcCB0467621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0467621.10 - phase: 1 /TE/pseudo/partial
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g04680.1                                                       115   1e-26
Glyma11g33550.1                                                        63   8e-11

>Glyma18g04680.1 
          Length = 233

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 70/99 (70%)

Query: 1   IILGENDNAVFASAXXXXXXXXXXXXXXXXXLRKIEDGSVISNEHTSKWRIFTDNGREYF 60
           + LG + + VFA                   LRKIEDGSV+SN HT+KWR+FTD  RE+F
Sbjct: 68  MTLGISASTVFAEDATTEAYPDNDPGGDLIGLRKIEDGSVVSNIHTAKWRVFTDKAREFF 127

Query: 61  VQGKLEQAEKFFFSALEEAKKGFGDRDPHVASACNNLGK 99
           +QGKL++AEK F SA+EEAK+GFG++DPHVASACNNL +
Sbjct: 128 LQGKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLAE 166


>Glyma11g33550.1 
          Length = 214

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 63  GKLEQAEKFFFSALEEAKKGFGDRDPHVASACNNLG 98
           GKL++AEK F SA+EEAK+GFG++DPHVASACNNL 
Sbjct: 146 GKLDEAEKLFLSAIEEAKEGFGEKDPHVASACNNLA 181