Jatropha Genome Database

JcCB0466631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.20 - phase: 1 /TE/partial
         (602 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g39780.1                                                        94   6e-19

>Glyma14g39780.1 
          Length = 1106

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 296  TENTSTCIPVLMTDITSVDQRLCNSNLEDKPGRGVWCEEDGCVFSSILCPFCSTF-NCLG 354
             E  +   P ++TD   VDQR+CN   +    +G+WC EDGCVFS+I CPFCS   N LG
Sbjct: 955  VEEDNFVAPFIITDSLFVDQRICNGIPKSAMEQGIWCPEDGCVFSTIFCPFCSNINNLLG 1014

Query: 355  VQIMAADASNVQLLNKVCFNERMYFFDA 382
            VQIMA D+SNVQLL+K+ F     +FD+
Sbjct: 1015 VQIMATDSSNVQLLDKILF-----YFDS 1037