Jatropha Genome Database

JcCB0466631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0466631.10 + phase: 0 /partial
         (84 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g01830.1                                                        46   9e-06

>Glyma04g01830.1 
          Length = 208

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 1   NRRARSKRKQAALPTLTNTGESQAE-PAEDKNTNQDDTIAQMDESLEFMVNDMYFQNPEI 59
           NRRARSKRKQ  L    N  E + E P E K   +   +   + S    + DMY Q+P+I
Sbjct: 131 NRRARSKRKQ--LTPAPNVVEPEVESPKEKKTRAEGFQVQPYENSSPHRIKDMYIQSPDI 188

Query: 60  QGIEQLIGRPEVTINYKPHW 79
            G +QL+G+ EV   Y  ++
Sbjct: 189 -GFDQLLGKIEVASCYSSYF 207