Jatropha Genome Database

JcCB0465701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0465701.10 - phase: 0 /partial
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g21060.1                                                        80   5e-16
Glyma01g04300.1                                                        50   5e-07
Glyma02g03400.2                                                        50   5e-07
Glyma02g03400.1                                                        50   5e-07
Glyma01g04300.2                                                        50   5e-07
Glyma10g41860.2                                                        46   8e-06
Glyma10g41860.1                                                        46   8e-06

>Glyma06g21060.1 
          Length = 764

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 10/92 (10%)

Query: 17 SLIKAYAVPFFLFAVSIFYQLVVLPRSFPPSHYDVLGIKRFSSIEEVKDAYEKLSSKW-- 74
          S+++AY +P  LFA ++FYQL ++P +FPPSHYDVL I+ +SS+E+VK+AY+KL SK   
Sbjct: 3  SIVRAYTLPILLFAGAMFYQLFLIPNAFPPSHYDVLQIESYSSVEKVKEAYDKLESKCLM 62

Query: 75 --------NSSAEVPSAADFIEIQYAYELLKN 98
                  NS+ EV    +F+++ Y    L N
Sbjct: 63 KLVTLSFRNSAVEVFDIHEFLKVSYEAIYLPN 94



 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 87  IEIQYAYELLKNPLWKRDYDIFGIDEQL 114
           ++I+YAYELL NPLWKRDYDIFGIDEQL
Sbjct: 162 LQIRYAYELLTNPLWKRDYDIFGIDEQL 189


>Glyma01g04300.1 
          Length = 434

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VLGI R S+ +E+K AY K++ K+  + +A  P AAD F E  ++Y +L +P  +R Y
Sbjct: 24  YEVLGISRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEATFSYNILSDPDKRRQY 83

Query: 106 DIFGID 111
           D  G +
Sbjct: 84  DSAGFE 89


>Glyma02g03400.2 
          Length = 413

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VLG+ R S+ +E+K AY K++ K+  + +A  P AAD F E+ ++Y +L +P  +R Y
Sbjct: 27  YEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQY 86

Query: 106 DIFGID 111
           D  G +
Sbjct: 87  DSAGFE 92


>Glyma02g03400.1 
          Length = 413

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VLG+ R S+ +E+K AY K++ K+  + +A  P AAD F E+ ++Y +L +P  +R Y
Sbjct: 27  YEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQY 86

Query: 106 DIFGID 111
           D  G +
Sbjct: 87  DSAGFE 92


>Glyma01g04300.2 
          Length = 410

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VLGI R S+ +E+K AY K++ K+  + +A  P AAD F E  ++Y +L +P  +R Y
Sbjct: 24  YEVLGISRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEATFSYNILSDPDKRRQY 83

Query: 106 DIFGID 111
           D  G +
Sbjct: 84  DSAGFE 89


>Glyma10g41860.2 
          Length = 406

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VL + R S+ +E+K AY KL+ K+  + +A  P A++ F E+ Y+Y +L +P  +R Y
Sbjct: 20  YEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQY 79

Query: 106 DIFGID 111
           D  G +
Sbjct: 80  DSAGFE 85


>Glyma10g41860.1 
          Length = 410

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 49  YDVLGIKRFSSIEEVKDAYEKLSSKW--NSSAEVPSAAD-FIEIQYAYELLKNPLWKRDY 105
           Y+VL + R S+ +E+K AY KL+ K+  + +A  P A++ F E+ Y+Y +L +P  +R Y
Sbjct: 20  YEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQY 79

Query: 106 DIFGID 111
           D  G +
Sbjct: 80  DSAGFE 85