Jatropha Genome Database

JcCB0464111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0464111.10 - phase: 0 /partial
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g04290.1                                                        87   4e-18
Glyma03g34300.1                                                        61   2e-10
Glyma19g36990.1                                                        61   2e-10
Glyma13g20930.1                                                        57   3e-09
Glyma10g06740.1                                                        57   4e-09
Glyma19g36990.2                                                        50   4e-07

>Glyma15g04290.1 
          Length = 253

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/43 (90%), Positives = 42/43 (97%)

Query: 18  GSVNGGNCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKS 60
           GSVNGGNCKELAAQPDVDGFLVGGASLKPEF+DII +ATVKK+
Sbjct: 211 GSVNGGNCKELAAQPDVDGFLVGGASLKPEFVDIINAATVKKN 253


>Glyma03g34300.1 
          Length = 309

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNGGN  ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct: 258 TRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 306


>Glyma19g36990.1 
          Length = 309

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVNGGN  ELA Q D+DGFLVGGASLK PEF  I+ S T KK
Sbjct: 258 TRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 306


>Glyma13g20930.1 
          Length = 305

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVN  N  ELA Q D+DGFLVGGASLK PEF  II S T KK
Sbjct: 254 TRIIYGGSVNASNSAELAKQEDIDGFLVGGASLKGPEFATIINSVTSKK 302


>Glyma10g06740.1 
          Length = 304

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 59
           T  +  GSVN  N  ELA Q D+DGFLVGGASLK PEF  II S T KK
Sbjct: 253 TRIIYGGSVNASNSAELAKQEDIDGFLVGGASLKGPEFATIINSVTSKK 301


>Glyma19g36990.2 
          Length = 306

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 12  TSYLTSGSVNGGNCKELAAQPDVDGFLVGGASLK 45
           T  +  GSVNGGN  ELA Q D+DGFLVGGASLK
Sbjct: 258 TRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLK 291