Jatropha Genome Database

JcCB0462781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0462781.10 - phase: 0 /partial
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g22250.2                                                        71   3e-13
Glyma04g32290.1                                                        70   4e-13
Glyma06g22250.1                                                        69   9e-13
Glyma17g08770.1                                                        66   7e-12
Glyma08g27190.1                                                        62   1e-10
Glyma18g50390.1                                                        62   1e-10
Glyma05g00280.1                                                        62   2e-10

>Glyma06g22250.2 
          Length = 1069

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGND- 59
          M AK +H+L D+NPDLQKQIGCM GI QLFDRH  L    R I Q R  LPS     +D 
Sbjct: 1  MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHQVLTA--RRISQKR--LPSGNSPFSDG 56

Query: 60 --SKEQKNAAQNTTEKNQKKAIKEKQ 83
             ++  N     T  +  K + E+Q
Sbjct: 57 SLERDSDNILHRQTATDTDKGVNERQ 82


>Glyma04g32290.1 
          Length = 1063

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 34/47 (72%), Gaps = 2/47 (4%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNR 47
          M AK +H+L D+NPDLQKQIGCM GI QLFDRHH L    R I Q R
Sbjct: 1  MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHHVLTA--RRISQKR 45


>Glyma06g22250.1 
          Length = 1245

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLPSSGQSGND- 59
          M AK +H+L D+NPDLQKQIGCM GI QLFDRH  L    R I Q R  LPS     N  
Sbjct: 1  MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHQVLTA--RRISQKR--LPSGIHHSNSP 56

Query: 60 ------SKEQKNAAQNTTEKNQKKAIKEKQ 83
                 ++  N     T  +  K + E+Q
Sbjct: 57 FSDGSLERDSDNILHRQTATDTDKGVNERQ 86


>Glyma17g08770.1 
          Length = 1027

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFL 36
          M AK +H+L D+NPDLQKQIGCM G+ QLFDRHH +
Sbjct: 1  MAAKLLHSLADDNPDLQKQIGCMTGVFQLFDRHHII 36


>Glyma08g27190.1 
          Length = 974

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 30/42 (71%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRA 42
          M  K + +L DENPDLQKQIGC+ G  QLFDRH FL G R A
Sbjct: 1  MSGKALKSLKDENPDLQKQIGCITGFFQLFDRHRFLTGQRSA 42


>Glyma18g50390.1 
          Length = 940

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 30/42 (71%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRA 42
          M  K + +L DENPDLQKQIGC+ G  QLFDRH FL G R A
Sbjct: 1  MSGKALKSLKDENPDLQKQIGCITGFFQLFDRHRFLTGQRSA 42


>Glyma05g00280.1 
          Length = 1027

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 12/87 (13%)

Query: 1  MPAKFIHNLPDENPDLQKQIGCMNGILQLFDRHHFLGGGRRAIGQNRKSLP--------S 52
          M AK +H+L D+N DLQKQIGCM G+ QLFDRHH +    R + Q R  LP         
Sbjct: 1  MAAKLLHSLADDNTDLQKQIGCMTGVSQLFDRHHIIPP--RHVTQKR--LPPGNSHFNHD 56

Query: 53 SGQSGNDSKEQKNAAQNTTEKNQKKAI 79
          + + G++S  Q+ +A N    ++K+ I
Sbjct: 57 NMERGSNSIPQRQSAANIRGVSEKQRI 83