Jatropha Genome Database

JcCB0461591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461591.10 + phase: 2 /partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19870.2                                                        75   2e-14
Glyma13g19870.1                                                        63   9e-11
Glyma13g19870.3                                                        62   1e-10
Glyma10g05520.1                                                        53   7e-08
Glyma12g07860.1                                                        53   9e-08
Glyma12g07860.2                                                        52   9e-08

>Glyma13g19870.2 
          Length = 373

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTX 60
           HCGSSN +   VEGN GN+                    TAVNAGGTNM+S+NG+ G + 
Sbjct: 235 HCGSSNAVEVLVEGNVGNHSINRSASGSNNGSNGQNGSSTAVNAGGTNMKSNNGLTGNSG 294

Query: 61  XXXXXXXXXXXXNRIDQNKFSQREAALTKFRQ---KRKERCFRKKV 103
                       NR+DQNK SQREAALTKFRQ   +R+ERCF KKV
Sbjct: 295 SGDASGSVSA--NRVDQNKTSQREAALTKFRQKRKERRERCFHKKV 338


>Glyma13g19870.1 
          Length = 549

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 13  EGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTXXXXXXXXXXXXX 72
           EGN GN+                    TAVNAGGTNM+S+NG+ G +             
Sbjct: 434 EGNVGNHSINRSASGSNNGSNGQNGSSTAVNAGGTNMKSNNGLTGNSGSGDASGSVSA-- 491

Query: 73  NRIDQNKFSQREAALTKFRQ---KRKERCFRKKV 103
           NR+DQNK SQREAALTKFRQ   +R+ERCF KKV
Sbjct: 492 NRVDQNKTSQREAALTKFRQKRKERRERCFHKKV 525


>Glyma13g19870.3 
          Length = 523

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 13  EGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTXXXXXXXXXXXXX 72
           EGN GN+                    TAVNAGGTNM+S+NG+ G +             
Sbjct: 408 EGNVGNHSINRSASGSNNGSNGQNGSSTAVNAGGTNMKSNNGLTGNSGSGDASGSVSA-- 465

Query: 73  NRIDQNKFSQREAALTKFRQ---KRKERCFRKKV 103
           NR+DQNK SQREAALTKFRQ   +R+ERCF KKV
Sbjct: 466 NRVDQNKTSQREAALTKFRQKRKERRERCFHKKV 499


>Glyma10g05520.1 
          Length = 683

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 40  TAVNAGGTNMESDNGIAGKTXXXXXXXXXXXXXNRIDQNKFSQREAALTKFRQ---KRKE 96
           TAVNAGGTN ES+NG+ G +             NR+DQNK SQRE ALTKFRQ   +R+E
Sbjct: 620 TAVNAGGTNTESNNGLTGNSGSGDASGSGSA--NRVDQNKTSQREVALTKFRQKRKERRE 677

Query: 97  RCFRKK 102
           RCF KK
Sbjct: 678 RCFHKK 683


>Glyma12g07860.1 
          Length = 549

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTX 60
            C SSN  GGP E N  NY                      +     N+E+ N  AG   
Sbjct: 373 QCVSSNAFGGPAESNAANYGVDGNAVESDHGSNNGQDGSNNLTIRTINVENGNVAAGSIG 432

Query: 61  XXXXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
                       N  D+ + + REAALTKFR KRKERCF K+V
Sbjct: 433 IGGIDRKSIG--NGTDEVRLALREAALTKFRLKRKERCFEKRV 473


>Glyma12g07860.2 
          Length = 392

 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 1   HCGSSNMLGGPVEGNGGNYXXXXXXXXXXXXXXXXXXXXTAVNAGGTNMESDNGIAGKTX 60
            C SSN  GGP E N  NY                      +     N+E+ N  AG   
Sbjct: 216 QCVSSNAFGGPAESNAANYGVDGNAVESDHGSNNGQDGSNNLTIRTINVENGNVAAGSIG 275

Query: 61  XXXXXXXXXXXXNRIDQNKFSQREAALTKFRQKRKERCFRKKV 103
                       N  D+ + + REAALTKFR KRKERCF K+V
Sbjct: 276 IGGIDRKSIG--NGTDEVRLALREAALTKFRLKRKERCFEKRV 316