Jatropha Genome Database

JcCB0461271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0461271.10 + phase: 0 /partial
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g38410.1                                                       136   5e-33
Glyma20g29450.1                                                        53   7e-08

>Glyma10g38410.1 
          Length = 382

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 87/130 (66%), Gaps = 5/130 (3%)

Query: 3   TLIKSTFPYFSKYRNIPNIKSVKPL----KFSIKPPPPDFDFRSEILQQSRTTIAKSYPQ 58
           T+IKSTFP F    N P   S +PL    K S+KPPPPDFD+R EI ++SR  IA+S+P+
Sbjct: 2   TVIKSTFPIFMT-NNAPFSLSTRPLRPILKVSVKPPPPDFDYRREISEESRAAIAESHPE 60

Query: 59  LLDLADTGNLVVIEKQLFGPVPAWRTEFVEPDAIWLVGTTHICXXXXXXXXXXXXXXXXX 118
           LLDLAD G+LV+++K+ FGPVP+WRTEFVEP++IWL+GTTH+                  
Sbjct: 61  LLDLADNGSLVLVQKKRFGPVPSWRTEFVEPESIWLIGTTHVSEVSAVEVERVVRALRPD 120

Query: 119 XXXXELCKSR 128
               ELC+SR
Sbjct: 121 NVVVELCRSR 130


>Glyma20g29450.1 
          Length = 53

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 76  FGPVPAWRTEFVEPDAIWLVGTTHIC 101
           FGPVP WRTEF EPD+IWL+GTTH+ 
Sbjct: 4   FGPVPYWRTEFFEPDSIWLIGTTHVS 29