Jatropha Genome Database

JcCB0460891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0460891.10 - phase: 0 
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g09270.1                                                        87   5e-18
Glyma12g30870.1                                                        86   6e-18
Glyma13g39440.1                                                        86   1e-17
Glyma11g19150.1                                                        85   2e-17
Glyma13g39450.1                                                        84   4e-17
Glyma12g30850.1                                                        78   2e-15
Glyma11g19170.1                                                        78   2e-15
Glyma11g19160.1                                                        73   7e-14
Glyma11g19190.1                                                        55   2e-08

>Glyma12g09270.1 
          Length = 493

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N PSD+ +   GSSVR P+RY NLQ++G  YFT  P I KD +PVKVGKV VL NM+S
Sbjct: 327 HANHPSDDVIYHVGSSVRRPLRYGNLQEYGFRYFTAKPCINKDGRPVKVGKVTVLSNMDS 386

Query: 70  FPRYM 74
           F RYM
Sbjct: 387 FRRYM 391


>Glyma12g30870.1 
          Length = 490

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 13  HTNEPSDNA--MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H  +PSD    +GSS+RNP+ Y NLQD+GL YFT  PWI KD  PVKVG+V VL +M+SF
Sbjct: 325 HAKQPSDIVYHVGSSLRNPLTYLNLQDYGLKYFTAKPWINKDGTPVKVGRVTVLTDMDSF 384

Query: 71  PRYM 74
            RYM
Sbjct: 385 QRYM 388


>Glyma13g39440.1 
          Length = 383

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  HTNEPSDNA--MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+PSD    +GSS+RNP+ Y NLQD+GL YFT  PWI KD  PVKVG+V VL +M+SF
Sbjct: 218 HANQPSDIIYHVGSSLRNPLTYLNLQDYGLKYFTAKPWINKDGTPVKVGRVTVLTDMDSF 277

Query: 71  PRYM 74
            RYM
Sbjct: 278 QRYM 281


>Glyma11g19150.1 
          Length = 493

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N PSD+ +   GSSVR P+RY  LQ++G  YFT  P I KD +PVKVGKV VL NM+S
Sbjct: 327 HANRPSDDVIYHIGSSVRRPLRYGKLQEYGFRYFTAKPCISKDGRPVKVGKVTVLSNMDS 386

Query: 70  FPRYM 74
           F RYM
Sbjct: 387 FRRYM 391


>Glyma13g39450.1 
          Length = 490

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 13  HTNEPSDNA--MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+PSD    +GSSV NPV+Y NL+D+ + YF  NPWI KD KPVKVGKV +L NM+SF
Sbjct: 325 HANQPSDIIYHLGSSVVNPVKYLNLRDYSVRYFMENPWINKDGKPVKVGKVTILSNMDSF 384

Query: 71  PRYM 74
            +YM
Sbjct: 385 RKYM 388


>Glyma12g30850.1 
          Length = 496

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 13  HTNEPSDNA--MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNSF 70
           H N+PSD    +GSSV NPV Y NL+D+ + YFT  PWI +D KPVKVGK  +L NM+SF
Sbjct: 325 HANQPSDIIYHVGSSVVNPVMYLNLRDYSVRYFTEKPWINRDGKPVKVGKFTILRNMDSF 384

Query: 71  PRYM 74
            +YM
Sbjct: 385 RKYM 388


>Glyma11g19170.1 
          Length = 475

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDN---AMGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N+P DN    +GSS+ NP+RY NL+D+   YF   PW+ K+  PV VGKV VLD M S
Sbjct: 325 HANQPCDNIIYQVGSSIANPIRYHNLKDYIYRYFKAKPWVNKEGNPVMVGKVTVLDTMTS 384

Query: 70  FPRYM 74
           F RYM
Sbjct: 385 FQRYM 389


>Glyma11g19160.1 
          Length = 432

 Score = 73.2 bits (178), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 13  HTNEPSDNAM---GSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVGKVKVLDNMNS 69
           H N+P DN +   GSS+ NPVRY NLQD+G  YF   P++ K+   V V KV VLD+M S
Sbjct: 264 HANKPCDNIIYHVGSSLENPVRYHNLQDYGFRYFKAKPYVNKEGNYVMVRKVTVLDSMAS 323

Query: 70  FPRYM 74
           F RYM
Sbjct: 324 FQRYM 328


>Glyma11g19190.1 
          Length = 484

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 22  MGSSVRNPVRYSNLQDFGLSYFTRNPWIGKDEKPVKVG-KVKVLDNMNSFPRYM 74
           +GSS+RNP   S+L+D    YFT+NP I K+ KPV +  KV  + +M+SF RYM
Sbjct: 329 IGSSLRNPFTISDLEDVAYQYFTKNPLINKNGKPVAISNKVTWISSMSSFERYM 382