Jatropha Genome Database

JcCB0458961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0458961.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g52430.1                                                       192   4e-49
Glyma20g23200.1                                                       191   5e-49
Glyma02g10470.1                                                       188   5e-48
Glyma10g43610.2                                                        74   1e-13

>Glyma18g52430.1 
          Length = 1025

 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 98/111 (88%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ S     +LLR K C+SNLSEFDDVQGHPGFDKQGTRFKRLIKDQN+H D+EEGI
Sbjct: 840 KPLIVMSPK---NLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHKDVEEGI 896

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELDE R K  AKDVAICRVEQLCPFPYDL+QRELKRYPS
Sbjct: 897 RRLVLCSGKVYYELDEHRTKVDAKDVAICRVEQLCPFPYDLVQRELKRYPS 947



 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 28/30 (93%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSNR 30
           VHDQ  GEKYCPLD+V+MNQDEEMFTVSNR
Sbjct: 679 VHDQTTGEKYCPLDNVIMNQDEEMFTVSNR 708


>Glyma20g23200.1 
          Length = 1021

 Score =  191 bits (486), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 100/111 (90%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ S     +LLR K C+SNLSEFDDVQGHPGFDKQGTRFKRLIKDQN+H+D+EEGI
Sbjct: 836 KPLIVMSPK---NLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNNHSDVEEGI 892

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELDE+R K  AKDVAICRVEQLCPFPYDL+QRELKRYP+
Sbjct: 893 RRLVLCSGKVYYELDEQRTKEDAKDVAICRVEQLCPFPYDLVQRELKRYPN 943



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           VHDQ  GE YCPLDHV+MNQ+EEMFTVSN
Sbjct: 675 VHDQTTGEIYCPLDHVIMNQNEEMFTVSN 703


>Glyma02g10470.1 
          Length = 1029

 Score =  188 bits (477), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 97/111 (87%), Gaps = 3/111 (2%)

Query: 135 QPLLITSMSCGASLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHADLEEGI 194
           +PL++ S     +LLR K C+SNLSEFDDVQGHPGFDKQGTRFKRLIKDQN H D+EEGI
Sbjct: 844 KPLIVMSPK---NLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNAHKDVEEGI 900

Query: 195 RRLVLCSGKVYYELDEERKKTGAKDVAICRVEQLCPFPYDLIQRELKRYPS 245
           RRLVLCSGKVYYELDE+R K  A DVAICRVEQLCPFPYDL+QRELKRYP+
Sbjct: 901 RRLVLCSGKVYYELDEQRTKVDANDVAICRVEQLCPFPYDLVQRELKRYPN 951



 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/29 (89%), Positives = 27/29 (93%)

Query: 1   VHDQENGEKYCPLDHVVMNQDEEMFTVSN 29
           VHDQ  GEKYCPLDHV+MNQDEEMFTVSN
Sbjct: 683 VHDQTTGEKYCPLDHVIMNQDEEMFTVSN 711


>Glyma10g43610.2 
          Length = 178

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 40/45 (88%)

Query: 178 KRLIKDQNDHADLEEGIRRLVLCSGKVYYELDEERKKTGAKDVAI 222
           K L+++QN H+D+EEGIRRLVLCSGKVYYELDE+R K  AKDVA+
Sbjct: 44  KNLLRNQNKHSDVEEGIRRLVLCSGKVYYELDEQRTKEDAKDVAV 88