Jatropha Genome Database

JcCB0455001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0455001.10 - phase: 1 /pseudo/partial
         (287 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g27890.1                                                       167   1e-41
Glyma02g01000.1                                                       137   2e-32

>Glyma10g27890.1 
          Length = 543

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 88/100 (88%)

Query: 188 QTQSELVEAVDRELRKMLIKPNAKDPFVLGVRVWPQAIPQFLIGHFDILDAAKGALRDKG 247
           +T SELVE VDR+LRK+LI PNA+DPFV+GVR+WPQAIPQFL+GH D+LD AK ++R+ G
Sbjct: 444 KTDSELVETVDRDLRKILINPNAQDPFVVGVRLWPQAIPQFLVGHLDLLDVAKASIRNTG 503

Query: 248 LEGLFLGGNYVSGVALGRCVEGAYEVAAEVTNFLSQYAYK 287
            EGLFLGGNYVSGVALGRCVEGAYEVAAEV +FL+   YK
Sbjct: 504 FEGLFLGGNYVSGVALGRCVEGAYEVAAEVNDFLTNRVYK 543


>Glyma02g01000.1 
          Length = 551

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)

Query: 188 QTQSELVEAVDRELRKMLIKPNAKDPFVLGVRVWPQAIPQFLIGHFDILDAAKGALRDKG 247
            T SELV  VDR+LRK+LI PNA+DPFV+GVR+WPQAIPQFLIGH D+LD AK +LR+ G
Sbjct: 469 NTDSELVATVDRDLRKILINPNAQDPFVVGVRLWPQAIPQFLIGHLDLLDVAKASLRNTG 528

Query: 248 LEGLFLGGNYVSGVALGRCVEGA 270
            EGLFLGGNYVSGVALGR VEGA
Sbjct: 529 FEGLFLGGNYVSGVALGRWVEGA 551