Jatropha Genome Database

JcCB0454891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0454891.10 + phase: 0 /pseudo
         (261 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23360.1                                                       248   6e-66

>Glyma16g23360.1 
          Length = 604

 Score =  248 bits (632), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 132/243 (54%), Positives = 166/243 (68%), Gaps = 12/243 (4%)

Query: 14  GTQYMSKLDEFVNFIEKVRKYGSIPPSYSAESKXXXXXXXXXXXVTNGRVAFERLQNCLL 73
           GT+Y SKLDEF +F+++VRKYG +  S++ ESK           +TNG+ AF RL++CL 
Sbjct: 184 GTKYTSKLDEFESFVDRVRKYGLLLTSHTGESKPSVILLIDDLPLTNGKSAFRRLKDCLH 243

Query: 74  LLVRTTRIPTVILVTDYDKADLADNTSRYMEELQSSLESAGACKVAFNPITNNSIKKALT 133
           +LV +T+IPT IL TDY  AD AD  +R +EEL+ SLES+GACKVAFNPIT N++KK L 
Sbjct: 244 VLVNSTQIPTAILFTDYGNADSADYNARCLEELKLSLESSGACKVAFNPITLNTMKKILF 303

Query: 134 KICKHEQFNVTAEQIDLIAKASGGDIRNAITSLQLFCVKPNMGXXXXXXXXT--PSYSDG 191
           +IC+ E  +VTAE +DLIAK SGGDIR+AITSLQ FC+KP+          +  P  SD 
Sbjct: 304 RICQMEHCDVTAEYVDLIAKTSGGDIRHAITSLQFFCLKPSTCYRGALKEESDKPVRSDD 363

Query: 192 KPDDINSLICGFSLLFGRDETLSLFHALGKFLHNKRETEVTMGSDVCYFFYGTKFSRLPL 251
                     G+SL FGRDETLSLFHALGKFLHNKRE+ V+   D   F    + SRLPL
Sbjct: 364 ----------GYSLHFGRDETLSLFHALGKFLHNKRESGVSTEYDQDGFLMQERLSRLPL 413

Query: 252 EMD 254
           +MD
Sbjct: 414 KMD 416