Jatropha Genome Database

JcCB0453321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453321.10 - phase: 0 /partial
         (151 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g26450.1                                                       229   6e-61
Glyma20g17660.1                                                       224   3e-59

>Glyma10g26450.1 
          Length = 975

 Score =  229 bits (585), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 108/145 (74%), Positives = 123/145 (84%), Gaps = 6/145 (4%)

Query: 6   MQVTEDFIPIISRIKASMAPLGGPKGEVSYAREHESVWFKGKRFAPAVWAGTPGEEQIKQ 65
           + VTEDF+P++SRIKA +APLGGPKGE+SYARE E+VWFKGKRF P +WAG+PGEEQIKQ
Sbjct: 427 IAVTEDFVPVVSRIKAIVAPLGGPKGEISYAREQEAVWFKGKRFTPNLWAGSPGEEQIKQ 486

Query: 66  LKPAVDSKGRKVGEEWFTTIKVEDALMRYHAAIDKAKARVLELLRGLSAELQSRINILIF 125
           L+ A+DSKGRKVGEEWFTT KVE AL RYH A  KAK RVLE+LRGL+AELQ  INIL+F
Sbjct: 487 LRHALDSKGRKVGEEWFTTPKVEAALTRYHEANAKAKERVLEILRGLAAELQYSINILVF 546

Query: 126 ASMLLVIAKALFAHV------RWVF 144
           +SMLLVIAKALFAH       RWVF
Sbjct: 547 SSMLLVIAKALFAHASEGRRRRWVF 571


>Glyma20g17660.1 
          Length = 665

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 122/143 (85%), Gaps = 6/143 (4%)

Query: 8   VTEDFIPIISRIKASMAPLGGPKGEVSYAREHESVWFKGKRFAPAVWAGTPGEEQIKQLK 67
           VTEDF+PI+SRIKA+++PLGGPKGE+SYAREHE+VWFKGKRF P +WAG+PGEEQIKQL 
Sbjct: 129 VTEDFVPILSRIKATVSPLGGPKGEISYAREHEAVWFKGKRFTPNLWAGSPGEEQIKQLS 188

Query: 68  PAVDSKGRKVGEEWFTTIKVEDALMRYHAAIDKAKARVLELLRGLSAELQSRINILIFAS 127
            A+DSKG+K GEEWFTT+KVE AL RYH A  KAK RVLE+LRGL+AELQ  INIL+F+S
Sbjct: 189 HALDSKGKKAGEEWFTTLKVEAALTRYHEANGKAKERVLEILRGLAAELQYNINILVFSS 248

Query: 128 MLLVIAKALFAHV------RWVF 144
            LLVIAKALFAH       RWVF
Sbjct: 249 TLLVIAKALFAHASEGRRRRWVF 271