Jatropha Genome Database

JcCB0453091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0453091.10 + phase: 0 
         (60 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g39930.1                                                       111   2e-25
Glyma06g14960.1                                                       110   5e-25
Glyma20g33880.1                                                        47   7e-06
Glyma10g33710.1                                                        47   7e-06

>Glyma04g39930.1 
          Length = 240

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 51/56 (91%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANEC 57
            DPLVTKGP LVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVY  E 
Sbjct: 184 QDPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKES 239


>Glyma06g14960.1 
          Length = 241

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 51/56 (91%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYANEC 57
            DPLVTKGP LVPL+GIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVY  E 
Sbjct: 185 QDPLVTKGPNLVPLIGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVYEKES 240


>Glyma20g33880.1 
          Length = 177

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 13  VPLLGIDVWEHAYYLQYKNVRPDYLKNIW-KVINWKYAS 50
           +PLL IDVWEHAYYL ++N RPDY+     K+++W   S
Sbjct: 126 LPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVS 164


>Glyma10g33710.1 
          Length = 244

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 2   MDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIW-KVINWKYAS 50
           ++PLV  G    PLL IDVWEHAYYL ++N RPDY+     K+++W   S
Sbjct: 189 VNPLVWGG--YYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVS 236