Jatropha Genome Database

JcCB0452011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0452011.10 + phase: 2 /pseudo/partial
         (256 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g08330.1                                                       221   5e-58
Glyma17g36720.1                                                       202   4e-52

>Glyma14g08330.1 
          Length = 209

 Score =  221 bits (564), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 113/128 (88%)

Query: 94  MSDLGQIRNLIPDESDCGFNLIVVDPPWENASASQKLLYPTLPNRYFLSLPIKQLTHTDG 153
           MSDLGQIRNLIP  +D GFNLIVVDPPWENASA QK  Y TLPNRYFLSLPIKQLTHT+G
Sbjct: 1   MSDLGQIRNLIPAHADSGFNLIVVDPPWENASAHQKSRYATLPNRYFLSLPIKQLTHTEG 60

Query: 154 ALVALWVTNREKLRDFVEKELFPTWGVNYAASFYWLKVKADGSLITDLDLFHHRPYECLL 213
           A+VALWVTNREKLR FVE+ELFP WGV+YAA+FYWLKVK +GS I DLDLFHHRPYECL+
Sbjct: 61  AIVALWVTNREKLRSFVERELFPAWGVSYAATFYWLKVKQNGSWICDLDLFHHRPYECLI 120

Query: 214 LGYCRREV 221
           LGY   +V
Sbjct: 121 LGYSPGKV 128


>Glyma17g36720.1 
          Length = 325

 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 128/194 (65%), Gaps = 42/194 (21%)

Query: 59  ILPVFNNLVVNETCDDVEAEFLNGKYVLPRQSCFYMSDLGQIRNLIPDESDCGFNLIVVD 118
           +LP FNNLV N+T DD  AE LN +Y++P++SCFYMSDLGQIRNLIP  +D GFNLIVVD
Sbjct: 143 VLPAFNNLVANDTKDDAVAEILNNRYIMPQESCFYMSDLGQIRNLIPALTDSGFNLIVVD 202

Query: 119 PPWENASASQKLLYPTLPNRY-------------------------FLSLPIKQLTHTDG 153
           PP EN+SA +K  Y +L   Y                         FLSLPIKQLTHT+G
Sbjct: 203 PPQENSSAHRKSRYISLQLIYEEVETCYLFCLGFSPWGVRNLAQLVFLSLPIKQLTHTEG 262

Query: 154 ALVALWVTNREKLRDFVEKELFPTWGVNYAASFYWL-----KVKADGSLITDLDLFHHRP 208
           ALVALWVTNREKLR             +YAA+FYWL     KVK +GS I DLDLFHHRP
Sbjct: 263 ALVALWVTNREKLR------------FSYAATFYWLKVISHKVKKNGSWICDLDLFHHRP 310

Query: 209 YECLLLGYCRREVA 222
           YECL+LGY  R+V+
Sbjct: 311 YECLILGYSPRKVS 324