Jatropha Genome Database

JcCB0449991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449991.10 + phase: 0 /partial
         (233 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g07320.1                                                        63   2e-10
Glyma11g20670.1                                                        55   6e-08
Glyma17g13810.1                                                        51   8e-07

>Glyma12g07320.1 
          Length = 340

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 2   IRFDLDKTSANEIDNWLHFALSRRVQRLEFNFD---SKVIPEVSRCYTLSMAHAGSSCIK 58
           +R  +D      +  W+ +A  + VQ L+ +F    S    E+S     ++  +    +K
Sbjct: 91  LRICMDLGDPWRVAEWVKYAAEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYEMK 150

Query: 59  SLTSVSLTNVDVTAEVLEHFLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLKHLEIQYCQ 118
           SL ++ L++VDV+ EV+E  L++CP                KV G +  RLKHLE+  C+
Sbjct: 151 SLCNLRLSSVDVSGEVIEGLLASCPLLESICVIESKRLVRLKVRGEA-LRLKHLELVECR 209

Query: 119 DFGQLEICAPNLVYFGYLGRKMRLHIVHAPSLI 151
               L+I A NLV F Y G+  +    + PSL+
Sbjct: 210 -IMDLDIYAVNLVTFRYQGKYGKFKFQNVPSLV 241


>Glyma11g20670.1 
          Length = 352

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 17  WLHFALSRRVQRLEFNFDSKVIPEVSRCYTLSMAHAGSSC---IKSLTSVSLTNVDVTAE 73
           W+ +A  + VQ L+ +F       + +   L++ +   S    +KSL ++ L++VDV+ E
Sbjct: 120 WVKYAAEKDVQTLDLDFSYHFSVPIYKMSELTIHNVFPSRGYEMKSLCNLRLSSVDVSGE 179

Query: 74  VLEHFLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLKHLEIQYCQDFGQLEICAPNLVYF 133
           V+E FL++CP                KV G +  RLKHLE+  C     L I A NL   
Sbjct: 180 VIEGFLASCP----------LLETIRKVQGEA-LRLKHLELVDCH-IMDLYISAQNLQTL 227

Query: 134 GYLGRKMRLHIVHAPSLI 151
            YLG   +    + PSL+
Sbjct: 228 RYLGEFGKFKFQNIPSLV 245


>Glyma17g13810.1 
          Length = 206

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 2   IRFDLDKTSANEIDNWLHFALSRRVQRLEFNFDSKVIPEVSRCYTLSMAHAGSSCIKSLT 61
           ++F     +  ++D W+HFA+ ++VQ+LE  F        +  Y L +         SL 
Sbjct: 101 LKFWFHVGTGCDVDKWIHFAIQKKVQKLELYFGH------TFEYVLPLHLFKLESFNSLH 154

Query: 62  SVSLTNVDVTAEVLEHFLSNCPNXXXXXXXXXXXXXXXKVAGPSPFRLKHLEI 114
            + L ++ VT E+LE+ L  CP                KV+GPS  +LK LE+
Sbjct: 155 VLRLKSITVTEEMLEYLLCRCPLLKTLSLVNSGVPKTMKVSGPS-LKLKCLEL 206