Jatropha Genome Database

JcCB0449231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0449231.10 + phase: 1 /partial
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g09980.1                                                       218   2e-57
Glyma12g02320.1                                                       217   3e-57

>Glyma11g09980.1 
          Length = 374

 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 112/128 (87%), Gaps = 1/128 (0%)

Query: 28  MSVQPTHPESVPINALVSVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 87
           +S  PTHPESVPINALV+VKGTPL+DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF
Sbjct: 248 LSTLPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 307

Query: 88  SMPEQALCFLAGANSIFTGEKLLTTPNNDFDVDQQMFKVLGLIPKAPSFSEDEEIAFESE 147
           SMPEQALCFLAGANSIFTGEKLLTTPNNDFD DQ MFKVLGL+PKAPS  E E    E  
Sbjct: 308 SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLHEGETSVTEDY 367

Query: 148 NCQAVSSS 155
             +A SSS
Sbjct: 368 K-EAASSS 374


>Glyma12g02320.1 
          Length = 374

 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 111/127 (87%)

Query: 28  MSVQPTHPESVPINALVSVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 87
           +S  PTHPESVPINALV+VKGTPL+DQKPVEIWEMIRMIATARI+MPKAMVRLSAGRVRF
Sbjct: 248 LSTLPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRF 307

Query: 88  SMPEQALCFLAGANSIFTGEKLLTTPNNDFDVDQQMFKVLGLIPKAPSFSEDEEIAFESE 147
           SMPEQALCFLAGANSIFTGEKLLTTPNNDFD DQ MFKVLGL+PKAPS +E E    E  
Sbjct: 308 SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLNEGETNVTEDY 367

Query: 148 NCQAVSS 154
              A SS
Sbjct: 368 KEAAFSS 374