Jatropha Genome Database

JcCB0444321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0444321.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g15820.1                                                       142   8e-35
Glyma05g05490.1                                                       142   1e-34

>Glyma17g15820.1 
          Length = 293

 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%), Gaps = 1/80 (1%)

Query: 37  HVNIITLSPC-FVALQEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA 95
           +++I+   P  F+ ++EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA
Sbjct: 214 NIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA 273

Query: 96  ALGKTRTRYLLYKDVNRNPL 115
           ALGKTRTRYL+YKD NR+PL
Sbjct: 274 ALGKTRTRYLIYKDANRSPL 293


>Glyma05g05490.1 
          Length = 294

 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%), Gaps = 1/80 (1%)

Query: 37  HVNIITLSPC-FVALQEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA 95
           +++I+   P  F+ ++EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA
Sbjct: 215 NIHIMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVIWMAPFVPQWYA 274

Query: 96  ALGKTRTRYLLYKDVNRNPL 115
           ALGKTRTRYL+YKD NR+PL
Sbjct: 275 ALGKTRTRYLIYKDANRSPL 294