Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.10 + phase: 0 /partial
         (50 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g26450.1                                                        87   5e-18
Glyma14g24190.1                                                        86   7e-18
Glyma18g02300.1                                                        50   5e-07
Glyma11g36150.1                                                        50   5e-07

>Glyma02g26450.1 
          Length = 2108

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTS 49
            +TLG+VTIQIDKVV+EGVY+GLFSLNH+ NKDGSSRTLEIEI W+NR S
Sbjct: 2056 TTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRIS 2104


>Glyma14g24190.1 
          Length = 2108

 Score = 86.3 bits (212), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTS 49
            +TLG+VTIQIDKVV+EGVY+GLFSLNH+ NKDGSSRTLEIEI W+NR S
Sbjct: 2056 TTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRIS 2104


>Glyma18g02300.1 
          Length = 2134

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNR 47
            S+ GKVTIQID+VV  G  +G ++L  ES K G SR LEIE  W+N+
Sbjct: 2089 SSFGKVTIQIDRVVMLGAVSGEYTLLPES-KSGPSRNLEIEFQWSNK 2134


>Glyma11g36150.1 
          Length = 2134

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNR 47
            S+ GKVTIQID+VV  G  +G ++L  ES K G SR LEIE  W+N+
Sbjct: 2089 SSFGKVTIQIDRVVMLGAVSGEYTLLPES-KSGPSRNLEIEFQWSNK 2134