Jatropha Genome Database

JcCB0432331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432331.10 + phase: 0 /partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g34350.1                                                       167   2e-42
Glyma03g31500.2                                                       144   3e-35
Glyma03g31500.1                                                       144   3e-35

>Glyma19g34350.1 
          Length = 311

 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 95/115 (82%), Gaps = 14/115 (12%)

Query: 9   VLLTTPTTPKGRMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAV 54
           VLLTTPTTP  RMKAIV  +EGFVYLVSSVGVTGARAS               TTKPVAV
Sbjct: 196 VLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAV 255

Query: 55  GFGISKPEHVKQVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSAL 109
           GFGISKPEHVKQVAGWGADGVIVGSAIVKVLG+AKSP+EGLKELE LT+SLK+AL
Sbjct: 256 GFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAAL 310


>Glyma03g31500.2 
          Length = 311

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 83/105 (79%), Gaps = 14/105 (13%)

Query: 19  GRMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAVGFGISKPEHV 64
            RM+AIV  +EGFVYLVSSVGVTGARAS               TTKPVAVGFGISKPEHV
Sbjct: 206 NRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLKEIKEATTKPVAVGFGISKPEHV 265

Query: 65  KQVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSAL 109
           KQV  WGADGVIVGSAIVKVLG+AKSP+EGLKELE  T+SLK+AL
Sbjct: 266 KQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELEVFTRSLKAAL 310


>Glyma03g31500.1 
          Length = 311

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 83/105 (79%), Gaps = 14/105 (13%)

Query: 19  GRMKAIVKASEGFVYLVSSVGVTGARAS--------------ETTKPVAVGFGISKPEHV 64
            RM+AIV  +EGFVYLVSSVGVTGARAS               TTKPVAVGFGISKPEHV
Sbjct: 206 NRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLKEIKEATTKPVAVGFGISKPEHV 265

Query: 65  KQVAGWGADGVIVGSAIVKVLGDAKSPEEGLKELENLTKSLKSAL 109
           KQV  WGADGVIVGSAIVKVLG+AKSP+EGLKELE  T+SLK+AL
Sbjct: 266 KQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELEVFTRSLKAAL 310