Jatropha Genome Database

JcCB0432281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432281.10 - phase: 0 /pseudo
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g08210.1                                                       173   5e-44
Glyma08g44600.1                                                       145   2e-35

>Glyma18g08210.1 
          Length = 219

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 103/122 (84%), Gaps = 1/122 (0%)

Query: 10  LSVKRFPRRVLLKSIGFNSILLRVSPVFAAPV-PDMKEPQVVRTLKLDSGVRIQEIIEGE 68
           L+V +F RR++L+ +G N +L   SP  AAP+ PDMKEP+V+RTLKL SGVR+Q+I+EGE
Sbjct: 40  LTVDKFSRRMVLQFMGINHMLCYASPALAAPIMPDMKEPEVIRTLKLPSGVRVQDIVEGE 99

Query: 69  GSEAHEGDVVEINYVCRRSNGYFVHSTVDQFSGESSPVILPLDENRIIKGLKDVLIGMKI 128
           G EAH+GD+V  N VCRR+NGYFV STVDQF+GES+PVILPLDEN++I GLK+VL GMK+
Sbjct: 100 GPEAHDGDLVTFNCVCRRANGYFVFSTVDQFNGESNPVILPLDENQMIVGLKEVLTGMKV 159

Query: 129 GG 130
           GG
Sbjct: 160 GG 161


>Glyma08g44600.1 
          Length = 248

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 10/122 (8%)

Query: 10  LSVKRFPRRVLLKSIGFNSILLRVSPVFAAPV-PDMKEPQVVRTLKLDSGVRIQEIIEGE 68
           L+V +F RR++L+ +GFN ++   SP  AAP+ PD+KEP+V+R +          I+EGE
Sbjct: 101 LTVDKFSRRMVLQFLGFNHVICYASPALAAPIMPDIKEPEVIRFVY---------IVEGE 151

Query: 69  GSEAHEGDVVEINYVCRRSNGYFVHSTVDQFSGESSPVILPLDENRIIKGLKDVLIGMKI 128
           G EAH+GD+V+ N VC R NGYFV STVDQFSGES+PVILPLDEN++I GLK+VL GM++
Sbjct: 152 GPEAHDGDLVKFNCVCWRGNGYFVFSTVDQFSGESNPVILPLDENQMIVGLKEVLTGMRV 211

Query: 129 GG 130
           GG
Sbjct: 212 GG 213