Jatropha Genome Database

JcCB0432051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432051.10 - phase: 0 /partial
         (170 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g13570.1                                                        57   1e-08
Glyma09g02690.1                                                        53   2e-07

>Glyma15g13570.1 
          Length = 444

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 122 SRVLKKLMQAQLEESGRLRRAIASRVEKPETVG-GFEVLVKHRHSVTAV 169
           S V +KL++ Q EESGR+RR+IASRV+   T   GF VLVKHRHSVTAV
Sbjct: 102 SLVAQKLLKEQNEESGRVRRSIASRVKVSGTGDEGFRVLVKHRHSVTAV 150


>Glyma09g02690.1 
          Length = 496

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 122 SRVLKKLMQAQLEESGRLRRAIASRVEKPETVGGFEVLVKHRHSVTAV 169
           S V +KL++ Q EESGR+RR++ASRV K     GF VL KHRHSVTAV
Sbjct: 102 SLVAQKLLKEQNEESGRVRRSLASRV-KVSGDEGFRVLAKHRHSVTAV 148