Jatropha Genome Database

JcCB0430471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430471.10 + phase: 1 /partial
         (193 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g40660.1                                                       168   2e-42
Glyma08g18250.1                                                       146   1e-35
Glyma13g22590.1                                                        81   7e-16
Glyma08g19540.1                                                        79   4e-15

>Glyma15g40660.1 
          Length = 864

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 111/154 (72%)

Query: 40  LRALFQSGMLESDSETIKVPVSWEAMTKFVNWCYTDELPSPPSGCLWDNMDTEERLSVLQ 99
           L+ LF+SGM ES S+ IKV +SWEA+ K V W Y+DELP+PPSGCLWDNMD EE+L  LQ
Sbjct: 706 LQGLFRSGMRESHSQVIKVDISWEALIKLVQWFYSDELPNPPSGCLWDNMDDEEKLFNLQ 765

Query: 100 PYXXXXXXXXXXXXXDVQDISYRVIISYLDSARHLSIKIIKIAADLSLWKLVEVAAIYLA 159
           PY             ++Q+  + VI+S LDS+  L IKIIK+A + SLWKLV+VAA  +A
Sbjct: 766 PYVELCWLAEFWILENIQEACWDVIMSCLDSSSQLPIKIIKMAYNHSLWKLVDVAANLMA 825

Query: 160 PLYRQLCHSGDLEALDEEVVDMIRAASVRLSQEG 193
           P YRQL +SG+LE  D+ +V +I +AS++L+QEG
Sbjct: 826 PSYRQLQNSGELEEFDDALVHLIYSASIQLNQEG 859


>Glyma08g18250.1 
          Length = 521

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 111/184 (60%), Gaps = 13/184 (7%)

Query: 23  CRIC--IVTKLCCGQVVII-----LRALFQSGMLESDSETIKVPVSWEAMTKFVNWCYTD 75
           C IC  +V  +   +V+++     L+ L  SGM ES SE IKV +SWEA+ K V W Y+D
Sbjct: 333 CNICSDMVPYMHVHKVILLSGCDYLKGLLWSGMQESHSEVIKVDISWEALIKLVQWFYSD 392

Query: 76  ELPSPPSGCLWDNMDTEERLSVLQPY------XXXXXXXXXXXXXDVQDISYRVIISYLD 129
           +LP+PPSGC+WDNMD EE+L  L                       + +  + VI+S LD
Sbjct: 393 DLPNPPSGCMWDNMDDEEKLFNLHHMWSFVDLLSSGFWKIFRKPAGIMEACWNVIMSCLD 452

Query: 130 SARHLSIKIIKIAADLSLWKLVEVAAIYLAPLYRQLCHSGDLEALDEEVVDMIRAASVRL 189
           S+  LSIKIIK+  +  LWKLVEV A  +AP YRQL +SG LE  D+ +V +I +AS++L
Sbjct: 453 SSNQLSIKIIKMVYNHYLWKLVEVVANLMAPSYRQLQNSGKLEEFDDALVHLIYSASIQL 512

Query: 190 SQEG 193
            QEG
Sbjct: 513 YQEG 516


>Glyma13g22590.1 
          Length = 221

 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%)

Query: 53  SETIKVPVSWEAMTKFVNWCYTDELPSPPSGCLWDNMDTEERLSVLQPYXXXXXXXXXXX 112
           SE IKV +SWEA+ K V W Y+D+LP+PPSGCLWDN D EE+L  LQP            
Sbjct: 119 SEVIKVDISWEALIKLVQWFYSDDLPNPPSGCLWDNKDDEEKLFNLQPCVELCWLAEFWI 178

Query: 113 XXDVQDISYRVIISYLDSARHLSIKII 139
             ++Q+  + VI+S LD+ +   + I 
Sbjct: 179 LENIQEACWNVIMSCLDNEQFFIVCIF 205


>Glyma08g19540.1 
          Length = 74

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%)

Query: 51  SDSETIKVPVSWEAMTKFVNWCYTDELPSPPSGCLWDNMDTEERLSVLQPYXXXXXXXXX 110
           S SE IKV +SWEA+ K V W Y+D+LP+PPSGCLWDN D EE+L  LQPY         
Sbjct: 1   SHSEVIKVDISWEALIKLVQWFYSDDLPNPPSGCLWDNKDDEEKLFNLQPYVELCWLVEF 60

Query: 111 XXXXDVQDISYRVI 124
               ++Q+  + VI
Sbjct: 61  WILENIQEACWNVI 74