Jatropha Genome Database

JcCB0428571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428571.10 + phase: 0 /partial
         (164 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g09470.1                                                       194   3e-50
Glyma07g26900.1                                                        95   3e-20
Glyma05g02000.1                                                        55   3e-08
Glyma17g09920.1                                                        50   9e-07

>Glyma02g09470.1 
          Length = 1125

 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 120/168 (71%), Gaps = 4/168 (2%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
           MGKTI +YGFP  V V +VK  +E ++G+GTVFA+K+R  K    R +AI+QF TA  A 
Sbjct: 1   MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60

Query: 61  LIIS----LNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLW 116
            ++S    + + LRYGTSYLKAR + +DIVP PR FLHS+D + L FGC+ISK +FSVLW
Sbjct: 61  SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 117 TGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRS 164
              +V VNFG G+RK+ F  SH  + YKL+LSYEN+W+IELH PR  +
Sbjct: 121 KKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNET 168


>Glyma07g26900.1 
          Length = 1072

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 20/158 (12%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKIRETKNGGQRKYAIVQFQTARDAE 60
           M KTI ++GF  +V+ +EVKK LE H+G  TV A+++ + K G    +  VQF   +  E
Sbjct: 1   MSKTIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHK-GDPTTHVDVQFTDRKSVE 59

Query: 61  LIISL-NKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGT 119
            I+ L  + L Y    L A  +  DI P PR F H MD I +HFG +             
Sbjct: 60  TILLLVTQHLSYSDYVLNATEINHDIFPKPRNFPHRMDDIVVHFGFK------------- 106

Query: 120 NVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIEL 157
                FG  LRK+  F ++  MDYKL +S E++ +IEL
Sbjct: 107 -----FGSRLRKMYIFFNYLTMDYKLQISSESISRIEL 139


>Glyma05g02000.1 
          Length = 1121

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKI-RETKNGGQRKYAIVQFQT--AR 57
           +  T+ V   P   T  ++   LES  G  TVFA++I  +  N   R +  VQF+T  AR
Sbjct: 9   LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68

Query: 58  DAELIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVL-- 115
              L +S    L +   +L+      DI+  P+  LH+     L+ G  +S  + SVL  
Sbjct: 69  SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNG---VLYAGFVLSDHRMSVLES 125

Query: 116 WTGTNVSVNFGFGLRK-LQFFLSHEQMDYKLDLSYENVWQIELHC 159
           W G      +   LRK L F++ H    Y+L+  +E++ +   +C
Sbjct: 126 WEGV---AGWVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYC 167


>Glyma17g09920.1 
          Length = 1120

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 1   MGKTIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKI-RETKNGGQRKYAIVQFQT--AR 57
           +  T+ V   P   T  ++   LES  G  TVFA++I  +  N   R +  VQF+T  AR
Sbjct: 8   LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67

Query: 58  DAELIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117
              L +S   +L +   +L+      DI+  P+   H + +  L+ G  +S  + SVL +
Sbjct: 68  SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQ---HRLQNGVLYAGFMLSDHRMSVLES 124

Query: 118 GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHC 159
              ++       ++L F++ H    Y+L+  +E++ +   +C
Sbjct: 125 WEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDILESHGYC 166