Jatropha Genome Database

JcCB0427111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0427111.20 - phase: 0 
         (54 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g19530.1                                                        55   2e-08
Glyma04g35230.3                                                        54   3e-08
Glyma04g35230.2                                                        54   3e-08
Glyma04g35230.1                                                        54   3e-08
Glyma14g17380.3                                                        51   3e-07
Glyma14g17380.2                                                        51   3e-07
Glyma14g17380.1                                                        51   3e-07
Glyma17g29330.2                                                        48   3e-06
Glyma17g29330.1                                                        48   3e-06

>Glyma06g19530.1 
          Length = 73

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 30/42 (71%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQLRRELE +TEKN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLRRELESNTEKN 73


>Glyma04g35230.3 
          Length = 73

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 30/42 (71%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQLRRELE +TEKN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLRRELESNTEKN 73


>Glyma04g35230.2 
          Length = 73

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 30/42 (71%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQLRRELE +TEKN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLRRELESNTEKN 73


>Glyma04g35230.1 
          Length = 73

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 30/42 (71%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQLRRELE +TEKN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLRRELESNTEKN 73


>Glyma14g17380.3 
          Length = 73

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQL+RELE +T KN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN 73


>Glyma14g17380.2 
          Length = 73

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQL+RELE +T KN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN 73


>Glyma14g17380.1 
          Length = 73

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKSTEKN 54
          W+DKEEGKEVTQQWE           FSLQL+RELE +T KN
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNTNKN 73


>Glyma17g29330.2 
          Length = 71

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 27/39 (69%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKST 51
          W+DKEEGKEVTQQWE           FSLQL+RELE +T
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNT 70


>Glyma17g29330.1 
          Length = 71

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 27/39 (69%)

Query: 13 WEDKEEGKEVTQQWEXXXXXXXXXXXFSLQLRRELEKST 51
          W+DKEEGKEVTQQWE           FSLQL+RELE +T
Sbjct: 32 WDDKEEGKEVTQQWEDDWDDDDVSDDFSLQLKRELESNT 70