Jatropha Genome Database

JcCB0426111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426111.10 - phase: 0 /partial
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g15140.1                                                       191   1e-49
Glyma04g39730.1                                                       184   1e-47

>Glyma06g15140.1 
          Length = 568

 Score =  191 bits (486), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 99/118 (83%)

Query: 1   AGPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHL 60
            GPG SLFD I  A G I IIAEDLGVITEDVVQLR+SIGAPGMAVLQFGFG DA+NPHL
Sbjct: 390 VGPGISLFDTIFRAVGRINIIAEDLGVITEDVVQLRRSIGAPGMAVLQFGFGGDANNPHL 449

Query: 61  PHNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           PHNHE NQVVYTGTHDNDT  GWW+ L + EKSNVL+YLS+ E DD+PWALIQ  +AS
Sbjct: 450 PHNHECNQVVYTGTHDNDTIGGWWEVLNQEEKSNVLRYLSLNEGDDIPWALIQRVLAS 507


>Glyma04g39730.1 
          Length = 550

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/117 (76%), Positives = 97/117 (82%)

Query: 2   GPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHLP 61
           GPG SLFDAI  A G I IIAEDLGVITEDVVQLR+SIGAPGMAVLQFGFG  A+NPHLP
Sbjct: 373 GPGISLFDAIFRAVGRINIIAEDLGVITEDVVQLRRSIGAPGMAVLQFGFGGGANNPHLP 432

Query: 62  HNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           HNHE NQVVYTGTHDNDT  GWW+ L + EKSNVL YLS+ E D++ WALIQ  +AS
Sbjct: 433 HNHECNQVVYTGTHDNDTIGGWWEALNQEEKSNVLSYLSLNEGDEISWALIQRVLAS 489