Jatropha Genome Database

JcCB0424221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.20 - phase: 2 /partial
         (95 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g10650.1                                                        72   1e-13
Glyma18g01430.1                                                        72   2e-13
Glyma05g27670.1                                                        70   6e-13
Glyma11g37480.1                                                        57   3e-09

>Glyma08g10650.1 
          Length = 543

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 3   TMKSQSFNLSCVSDFESSQKSINWGMH-PSTTLDDDFQVCWFQGDCYAMNLGLHNIELPE 61
           ++K+Q FNL C+SD +  Q+++  G    S  LD+D      Q +CY MN GL NI++ E
Sbjct: 454 SLKTQGFNLDCISDLDFYQRNLLLGGEVASAPLDEDLNFFLLQSECYNMNFGLQNIDMSE 513

Query: 62  YCDPGLITEVPTHLHDAVRF 81
           Y DP L  EVP+H +D+  +
Sbjct: 514 YYDPRLTAEVPSHFYDSADY 533


>Glyma18g01430.1 
          Length = 529

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 1   SSTMKSQSFN-LSCVSDFESSQKSINWGMHPSTTLDDDFQVCWFQGDCYA-MNLGLHNIE 58
           +S +K+Q +N LS +SD E  Q+++      S +LD+D    W +G+CY  MN GL NI 
Sbjct: 437 TSGLKTQEYNNLSSISDQEIYQRNLLGCEAASASLDEDLHFYWLEGECYNNMNFGLQNIG 496

Query: 59  LPEYCDPGLITEVPTHLHDAVRF 81
           + EY DPGLI+E P HL+D+  +
Sbjct: 497 MSEYYDPGLISEAPIHLYDSADY 519


>Glyma05g27670.1 
          Length = 584

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 3   TMKSQSFNLSCVSDFESSQKSINWGMH-PSTTLDDDFQVCWFQGDCYAMNLGLHNIELPE 61
           ++K+Q FN  C+SD +  Q+++  G    S  L++D      Q +CY MN GL NI++ E
Sbjct: 495 SLKAQGFNRDCISDLDFYQRNLLLGGEVASAPLEEDLNFFLLQTECYNMNFGLQNIDMSE 554

Query: 62  YCDPGLITEVPTHLHDAVRF 81
           Y DP LI EVP+H +D+  +
Sbjct: 555 YYDPRLIAEVPSHFYDSADY 574


>Glyma11g37480.1 
          Length = 497

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 26  WGMHPSTTLDDDFQVCWFQGDCYA-MNLGLHNIELPEYCDPGLITEVPTHLHDAVRF 81
           W    +T   +D    W QG+CY  MN  L NI + EY DPGLI+E PTHL+D+  +
Sbjct: 431 WKFTKATFFWEDLHFYWLQGECYNNMNFSLQNIGMSEYYDPGLISEAPTHLYDSADY 487