Jatropha Genome Database

JcCB0424221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.10 + phase: 0 /pseudo/partial
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37470.1                                                        57   4e-09

>Glyma11g37470.1 
          Length = 70

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 69  IPLTRPRSPKLGRKP--SSYMVQEASFQHPQRPSVNAESSKRVVPKGNQSTTHSITLLTR 126
           I LT PRSPKLGRK   SS  VQ+ S  +  +P +   +SKR   K N++T  S+TLL+ 
Sbjct: 1   ISLTLPRSPKLGRKASSSSSTVQDKSLGNSWKPPI--STSKRTTEKNNRTTRQSVTLLS- 57

Query: 127 KKAHENASPNIQH 139
               ENASPNIQ 
Sbjct: 58  NNTRENASPNIQQ 70