Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424111.10 + phase: 2 /partial
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g04220.1                                                       178   1e-45
Glyma15g15250.1                                                       177   2e-45
Glyma07g37010.1                                                       152   8e-38
Glyma17g33220.1                                                        66   9e-12
Glyma18g39550.1                                                        47   6e-06

>Glyma09g04220.1 
          Length = 114

 Score =  178 bits (451), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 93/104 (89%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKED+ Q++LL+ACRNCDHQEVADN  VYRNE+ HSV E TQ+LQDVA+DPTLPR
Sbjct: 11  NNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TKSVRCS C HGEAVF QAT+R EEG TLF+VCCNPNCG+RWRD
Sbjct: 71  TKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>Glyma15g15250.1 
          Length = 114

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 94/104 (90%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKED++Q++LL+ACRNCDHQEVADN  VYRNE+QH V E TQ+LQDVA+DPTLPR
Sbjct: 11  NNILYPKEDREQKVLLFACRNCDHQEVADNFCVYRNEIQHPVGERTQVLQDVAADPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TKSVRC+ C HGEAVF QAT+R EEG TLF+VCCNPNCG+RWRD
Sbjct: 71  TKSVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>Glyma07g37010.1 
          Length = 114

 Score =  152 bits (384), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NN+LYP EDK++++LLYACRNC+H+E+AD+N VYRN++ HSV   T+ L++VA+DPTLPR
Sbjct: 11  NNVLYPTEDKEEKLLLYACRNCNHEEIADSNVVYRNKIHHSVQRRTRELENVAADPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TKSVRCS C HGEAVF +A  + EEG  L +VCCNP CG RWRD
Sbjct: 71  TKSVRCSQCNHGEAVFFKAPVKGEEGMALIFVCCNPTCGYRWRD 114


>Glyma17g33220.1 
          Length = 48

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 4/51 (7%)

Query: 54  SDPTLPRTKSVRCSACGHGEAVFLQATSREE-GFTLFYVCCNPNCGNRWRD 103
           ++PTLPR KS++C+   HG+A+F QAT++EE G  LF+ CCNP+ G+ WRD
Sbjct: 1   ANPTLPRIKSIQCN---HGKAIFFQATTKEEEGMILFFACCNPSSGHEWRD 48


>Glyma18g39550.1 
          Length = 111

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 17  YACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPRTKSVRCSACGHGEAVF 76
           Y C   +  E+    R+ R E++   +E      D+ + P+   T    C  CGHG+A F
Sbjct: 31  YVCHIENRVEIKRKQRLVRKEIEPIFSE-----DDMTNAPSTEGT----CPFCGHGKAAF 81

Query: 77  --LQATSREEGFTLFYVCCNPNCGNRWRD 103
              Q  S +E  TLFY C N +C  +WR+
Sbjct: 82  KEFQTRSADEPATLFYKCLNNDCKKQWRE 110