Jatropha Genome Database

JcCB0420431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0420431.10 + phase: 2 /partial
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g33360.1                                                        83   6e-17
Glyma19g36070.1                                                        80   4e-16

>Glyma03g33360.1 
          Length = 373

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 43/44 (97%)

Query: 69  ERNEIRLGLPSKGRMASDTIDLLKDCQLSVKQVNPRQYVAQIPQ 112
           +R EIRLGLPSKGRM++DT++LLK+CQLSVKQVNPRQYVA+IPQ
Sbjct: 36  DRKEIRLGLPSKGRMSADTLELLKNCQLSVKQVNPRQYVAEIPQ 79


>Glyma19g36070.1 
          Length = 368

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 42/44 (95%)

Query: 69  ERNEIRLGLPSKGRMASDTIDLLKDCQLSVKQVNPRQYVAQIPQ 112
           +R EIRLGLPSKGRM++DT+ LL++CQLSVKQVNPRQYVA+IPQ
Sbjct: 31  DRKEIRLGLPSKGRMSADTLQLLQNCQLSVKQVNPRQYVAEIPQ 74