Jatropha Genome Database

JcCB0420241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0420241.10 - phase: 0 /TE/pseudo/partial
         (160 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g17970.1                                                        60   1e-09
Glyma08g10210.1                                                        59   3e-09
Glyma01g03440.1                                                        58   5e-09
Glyma18g14690.1                                                        56   2e-08
Glyma14g29560.1                                                        55   4e-08
Glyma01g24910.1                                                        50   1e-06
Glyma17g29280.1                                                        47   8e-06

>Glyma06g17970.1 
          Length = 270

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 39  KCNVDATIHMTEGRSSYAGL-VRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLT 97
           +CNVDA I   + +   AGL +R+E G FL A T    GV  P  A+A  L + ++W   
Sbjct: 143 ECNVDAAI-FEDVKQFGAGLCLRDEKGNFLKAFTATTTGVPTPREAEAWALHQAINWTHH 201

Query: 98  RPIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAH 157
             +  V+ E+DC  +   +       +++  +L   + +LS  P+S + + +RQ N   H
Sbjct: 202 LGMQNVIFELDCKLVVDNMVNNKKGSTEFHAILHRCRAILSNSPNSRMSFEKRQANLITH 261

Query: 158 ALA 160
            LA
Sbjct: 262 NLA 264


>Glyma08g10210.1 
          Length = 304

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVD      EG+S +   +R++ G+F++A TG    VL+    +A  + + L WL  +
Sbjct: 150 KCNVDTAFMDEEGKSGFGACLRDDTGEFMMAKTGWMNAVLRVKEGEAHAILQSLLWLTNQ 209

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            I  +  + +          GF        +L +I+ +L   PS  + +VRRQ N  A +
Sbjct: 210 NIPNIKSKEE-----DITGCGF--------ILNQIRDILRSYPSYSIEYVRRQANLVADS 256

Query: 159 LA 160
           LA
Sbjct: 257 LA 258


>Glyma01g03440.1 
          Length = 430

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA +   E +   A  +  E G F VA T  F G   P  A+A+     L+ +  +
Sbjct: 303 KCNIDAVLFHEENKFGVAACIHEEEGMFAVAATSWFHGQPTPQEAEAVAFLFALNGIKEQ 362

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +G +++E DC  +  A         +   +L+     +S I +  + +V +Q N+ AH+
Sbjct: 363 QLGNIVIETDCKAISDAFKAQQFDNFEAGCILKICNTQISDIHNCSIQFVSKQANQVAHS 422

Query: 159 LA 160
           LA
Sbjct: 423 LA 424


>Glyma18g14690.1 
          Length = 278

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 60/122 (49%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+D      +        ++++ G F+ A      G+ + H  +A+ L + L+WL   
Sbjct: 143 KCNIDVAYFQEQQWWGKGMCIQDDKGWFVRATMNIRHGMPEVHEGEALVLLQTLTWLKNM 202

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
               V VE DC RL  ++       S++  +L + K++L   P+ ++  +R+Q N  AH+
Sbjct: 203 DYQYVEVESDCKRLTDSLDRNIMDDSEFGMILNKCKRILMSFPNHKVSLIRKQANCIAHS 262

Query: 159 LA 160
           LA
Sbjct: 263 LA 264


>Glyma14g29560.1 
          Length = 128

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 55/105 (52%)

Query: 49  TEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTRPIGRVLVEID 108
           T G+S    ++R+   +F +A +G     +  ++ +A+G  +VL W+ +  I  ++ ++D
Sbjct: 23  TRGKSLDGAVIRDYKEEFTIAWSGWSQSYMTIYMGEAVGFLQVLQWIWSLDIFHIIFKMD 82

Query: 109 CLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGN 153
           C  +   +  G    S+   + +E +++L   P+  L ++RRQ N
Sbjct: 83  CKVVVDRINKGTQDTSETGSINQECRRILESFPNFSLEFIRRQAN 127


>Glyma01g24910.1 
          Length = 342

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+D T+   +          N  G    A T +  G   P   KA GL + ++W++  
Sbjct: 231 KCNIDVTLFQDQ----------NSFG----AKTFYSNGFPDPRTTKAWGLLQAMNWMVDL 276

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +  V+ E+DC  + +A+        D+  ++ + K  LS   +S + + R+Q N+ AH 
Sbjct: 277 CMENVIFEVDCEAILKAILKPIKGYLDFHYIISKCKDYLSNHTNSLVSFKRKQTNQVAHT 336

Query: 159 LA 160
           LA
Sbjct: 337 LA 338


>Glyma17g29280.1 
          Length = 865

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVDA+I   E        + ++ G F+ A T     + KP  A+A  L++ L W+ + 
Sbjct: 275 KCNVDASIFKEEPSFGIGMCLHDDNGTFVKARTASSMSIPKPDEAEAFALKKSLEWIQSL 334

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQI 140
            +  V+VE DC  +   + +     SD+  +L  +  L  Q+
Sbjct: 335 HLQNVVVETDCKLVTDHIDSRQKGLSDFILILANLISLGLQV 376