Jatropha Genome Database

JcCB0418081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0418081.10 - phase: 0 /partial
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g33790.1                                                       134   3e-32
Glyma07g30970.1                                                        72   2e-13

>Glyma12g33790.1 
          Length = 365

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 71/92 (77%)

Query: 16  METLSNSESCNGESKVYAVILDLDGTLLDTESATKGVLKEFLAKYGKELDKEREESKRLG 75
           M        CN  +KV AVI DLDGTLLDTE AT+GVL EFLA+YGKELD+E+EE KRLG
Sbjct: 1   MSCCCEFNGCNQGAKVLAVIFDLDGTLLDTERATRGVLNEFLARYGKELDREKEEKKRLG 60

Query: 76  MTLQDSAVAIVKDYGLPLTPDQFIHEIMPMYR 107
           MT +DSA  IVKDY LPLTPDQFI EI P+YR
Sbjct: 61  MTQKDSAAIIVKDYELPLTPDQFIKEITPLYR 92


>Glyma07g30970.1 
          Length = 377

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 31  VYAVILDLDGTLLDTESATKGVLKEFLAKYGKELDKEREESKRLGMTLQDSAVAIVKDYG 90
           +  VILDLDGTLL+T+     VLK  L KYGKE D  RE  K +G T  ++A A+V+DY 
Sbjct: 8   IRCVILDLDGTLLNTDGIVGNVLKVMLGKYGKEWDG-REAQKIIGTTPFEAAAAVVQDYQ 66

Query: 91  LPLTPDQFIHEIMPMY 106
           LP +  +F+ EI P++
Sbjct: 67  LPCSAIEFLSEISPLF 82