Jatropha Genome Database

JcCB0417211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417211.10 - phase: 0 /pseudo/partial/short
         (34 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g38150.1                                                        54   3e-08
Glyma16g02930.1                                                        54   4e-08
Glyma07g06290.1                                                        54   4e-08
Glyma18g00830.1                                                        54   5e-08
Glyma11g36910.1                                                        53   7e-08
Glyma05g28100.1                                                        52   2e-07
Glyma08g11100.1                                                        51   3e-07
Glyma05g28110.1                                                        51   3e-07
Glyma16g05970.1                                                        50   5e-07
Glyma19g26180.1                                                        49   1e-06
Glyma19g26220.1                                                        49   1e-06
Glyma16g05940.1                                                        48   2e-06
Glyma19g26210.1                                                        47   6e-06

>Glyma05g38150.1 
          Length = 103

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLL+PGLLFQ+P +G
Sbjct: 35 MADWGPVVIAVVLFVLLSPGLLFQMPARG 63


>Glyma16g02930.1 
          Length = 70

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV V+VVLF+LLTPGLL QIPGKG
Sbjct: 1  MADWGPVFVSVVLFILLTPGLLIQIPGKG 29


>Glyma07g06290.1 
          Length = 70

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV V+VVLF+LLTPGLL QIPGKG
Sbjct: 1  MADWGPVFVSVVLFILLTPGLLIQIPGKG 29


>Glyma18g00830.1 
          Length = 69

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLL+PGLLFQ+PG+ 
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRS 29


>Glyma11g36910.1 
          Length = 69

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLL+PGL+FQ+PGK 
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLVFQLPGKS 29


>Glyma05g28100.1 
          Length = 69

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M+DWGPV V++VLFVLLTPGLLFQ+PG+ 
Sbjct: 1  MSDWGPVFVSLVLFVLLTPGLLFQVPGRS 29


>Glyma08g11100.1 
          Length = 70

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 27/28 (96%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          ADWGPV+++VVLFVLL+PGLLFQ+P KG
Sbjct: 3  ADWGPVVISVVLFVLLSPGLLFQLPAKG 30


>Glyma05g28110.1 
          Length = 70

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 27/28 (96%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          ADWGPV+++VVLFVLL+PGLLFQ+P KG
Sbjct: 3  ADWGPVVISVVLFVLLSPGLLFQLPAKG 30


>Glyma16g05970.1 
          Length = 69

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M DWGPV V+VVLF+LLTPGLL QIPG+G
Sbjct: 1  MGDWGPVFVSVVLFILLTPGLLVQIPGRG 29


>Glyma19g26180.1 
          Length = 69

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 26/29 (89%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M DWGPV V+VVLF+LL+PGLL QIPG+G
Sbjct: 1  MGDWGPVFVSVVLFILLSPGLLVQIPGRG 29


>Glyma19g26220.1 
          Length = 70

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 24/27 (88%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          ADWGPVIVAV LF+LL+PGLLFQ P K
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQFPSK 29


>Glyma16g05940.1 
          Length = 70

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query: 2  ADWGPVIVAVVLFVLLTPGLLFQIPGK 28
          ADWGPVI+AV LF+LL+PGLLFQ P +
Sbjct: 3  ADWGPVIIAVALFILLSPGLLFQFPAR 29


>Glyma19g26210.1 
          Length = 117

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADW PV++ VVLFVLL PGLLF  PG G
Sbjct: 49 MADWAPVLIGVVLFVLLQPGLLFSFPGNG 77