Jatropha Genome Database

JcCB0415641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0415641.10 - phase: 1 /partial
         (144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g26420.1                                                        87   8e-18

>Glyma05g26420.1 
          Length = 375

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 3/64 (4%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDAANNWTLQCEPSGFRPAAKSTWSTCP 60
           C+S+V   S+DYPLLVPN TY +TA+ CVKC CD++NN+ LQCEPS  +P   + WS CP
Sbjct: 229 CSSNVKNDSLDYPLLVPNATYAYTAHECVKCKCDSSNNFILQCEPSQLKP---TNWSVCP 285

Query: 61  SMRC 64
           SM C
Sbjct: 286 SMEC 289