Jatropha Genome Database

JcCB0403471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0403471.10 + phase: 2 /TE/partial
         (95 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g13760.1                                                        50   7e-07
Glyma06g18690.1                                                        48   2e-06

>Glyma07g13760.1 
          Length = 995

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 28/32 (87%)

Query: 1   EAILLQGLLDELGIRQNNIVVHCDSQSAIHLA 32
           EAI L+G+++ELGI Q+ + +HCDSQSAIHLA
Sbjct: 900 EAIWLKGMVNELGIEQSCVTIHCDSQSAIHLA 931


>Glyma06g18690.1 
          Length = 1169

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 28/35 (80%)

Query: 1    EAILLQGLLDELGIRQNNIVVHCDSQSAIHLAKTK 35
            EA+ L+GL+ +LG+ +  +VVHCDSQSAIHL K +
Sbjct: 1075 EALWLKGLVRDLGVSKKEVVVHCDSQSAIHLTKNQ 1109