Jatropha Genome Database

JcCB0400871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0400871.10 - phase: 0 /partial
         (84 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g03710.2                                                        49   1e-06
Glyma17g03710.1                                                        49   1e-06
Glyma07g36830.1                                                        49   1e-06

>Glyma17g03710.2 
          Length = 715

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 1  MDTQPAEELLRKIQELEAGQAHLEQEMSKLKLTSDPKSEHDLQ 43
          M T P +EL++KIQ+LE G AHL+QEMSKLKL SD +  H  Q
Sbjct: 1  MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKL-SDVRHGHHRQ 42


>Glyma17g03710.1 
          Length = 771

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 1  MDTQPAEELLRKIQELEAGQAHLEQEMSKLKLTSDPKSEHDLQ 43
          M T P +EL++KIQ+LE G AHL+QEMSKLKL SD +  H  Q
Sbjct: 1  MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKL-SDVRHGHHRQ 42


>Glyma07g36830.1 
          Length = 770

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)

Query: 1  MDTQPAEELLRKIQELEAGQAHLEQEMSKLKLTSDPKSEHDLQ 43
          M T P +EL++KIQ+LE G AHL+QEMSKLKL SD +  H  Q
Sbjct: 1  MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKL-SDVRHGHHRQ 42